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Molecular Engineer Jobs in Colorado (NOW HIRING)

We sit at the intersection of molecular biology, bioinformatics, and next-generation sequencing ... Identify, document, and track software defects; collaborate with engineering teams to troubleshoot ...

We sit at the intersection of molecular biology, bioinformatics, and next-generation sequencing ... Identify, document, and track software defects; collaborate with engineering teams to troubleshoot ...

Post-Doctoral Fellow

Aurora, CO

$49K - $67K/yr

... engineering, computational biology, and molecular genetics. * Analyze and interpret complex structural and biochemical datasets to advance the lab's research objectives. * Develop new technical ...

Project Engineer

Boulder, CO ยท On-site

$88K - $109K/yr

Peptides, Lipids & Carbohydrates, Injectables, Highly Potent & Oncology, Small Molecules, and ... The project engineer manages multiple, high-value projects over a diverse number of disciplines ...

Post-Doctoral Fellow

Aurora, CO ยท On-site

$49K - $67K/yr

... engineering, computational biology, and molecular genetics. * Analyze and interpret complex structural and biochemical datasets to advance the lab's research objectives. * Develop new technical ...

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Showing results 1-20

Molecular Engineer information

See Colorado salary details

$62K

$144.4K

$206.6K

How much do molecular engineer jobs pay per year?

As of Aug 12, 2026, the average yearly pay for molecular engineer in Colorado is $144,383.00, according to ZipRecruiter salary data. Most workers in this role earn between $106,700.00 and $206,100.00 per year, depending on experience, location, and employer.

What is a molecular engineer?

A Molecular Engineer designs and manipulates molecules to develop new materials, medicines, or technologies. They apply principles from chemistry, biology, and engineering to create solutions in fields like healthcare, nanotechnology, and energy. Their work involves laboratory experiments, computer modeling, and collaboration with scientists and engineers.

What does a molecular engineer do?

A molecular engineer designs and develops molecules and materials at the atomic or molecular level, often working in fields like nanotechnology, pharmaceuticals, or materials science. They use tools such as spectroscopy and microscopy, and typically require a strong background in chemistry, physics, or engineering, along with laboratory skills and problem-solving abilities.

What are some typical daily responsibilities for a molecular engineer?

As a Molecular Engineer, your day-to-day tasks often include designing and synthesizing new molecules or materials, conducting experiments, and analyzing data from advanced laboratory equipment. You may collaborate closely with chemists, biologists, and engineers to develop innovative solutions for fields like drug development, nanotechnology, or materials science. Documentation of experimental results, preparing technical reports, and troubleshooting laboratory protocols are also common parts of the role. This dynamic environment offers the opportunity to work on cutting-edge projects and contribute to advancements in technology and medicine.

What jobs can you get with molecular engineer?

A molecular engineer can work in industries such as pharmaceuticals, biotechnology, materials science, and chemical manufacturing. Common roles include research scientist, process engineer, product development engineer, and quality control specialist, often requiring knowledge of laboratory techniques, chemical processes, and relevant software tools.

What are the key skills and qualifications needed to thrive as a molecular engineer, and why are they important?

To thrive as a Molecular Engineer, you need a strong background in chemistry, biochemistry, molecular biology, and materials science, typically supported by an advanced degree in a relevant field. Proficiency with tools such as molecular modeling software, spectroscopic analysis, and laboratory automation systems is commonly required. Strong analytical thinking, attention to detail, effective teamwork, and the ability to communicate complex concepts clearly are highly valued soft skills. These attributes enable Molecular Engineers to innovate, ensure experimental accuracy, and contribute effectively to multidisciplinary projects.

What are popular job titles related to Molecular Engineer jobs in Colorado? For Molecular Engineer jobs in Colorado, the most frequently searched job titles are:
Infographic showing various Molecular Engineer job openings in Colorado as of August 2026, with employment types broken down into 90% Full Time, 5% Part Time, and 5% Contract. Highlights an 86% Physical, 5% Hybrid, and 9% Remote job distribution, with an average salary of $144,383 per year, or $69.4 per hour.

Senior Process Engineer- Small Molecule/ Oligo/ Peptide

CRB

Denver, CO โ€ข On-site, Remote

$103K - $165K/yr

Full-time

Re-posted 10 days ago


Job description

Company Description

CRB is a leading provider of sustainable engineering, architecture, construction and consulting solutions to the global life sciences and food and beverage industries. Our more than 1,100 employees provide best-in-class solutions that drive success and positive change for our clients, our people and our communities. CRB is a privately held company with a rich history of serving clients throughout the world, consistently striving for the highest standard of technical knowledge, creativity and execution.

Job Description

We are seeking a skilled and experienced Process Engineer III/ IV or V with deep expertise in small molecule manufacturing to join our engineering consulting team. This role combines technical leadership with strategic client engagement, supporting process design, scale-up, optimization, and regulatory compliance across a variety of pharmaceutical and chemical industry projects.

The Process Engineer III will lead the design and execution of process scopes-such as unit operations, systems, or facility areas-on small to medium-sized projects. You will manage scope, budget, and schedule, while maintaining clear communication with clients and internal teams. This role also includes mentoring junior staff, contributing to high-quality deliverables, and supporting capital project planning and regulatory alignment.

This position can be based near any CRB location, remote option will be considered

Key Responsibilities

  • Lead and support client projects focused on small molecule API process development, scale-up, and manufacturing optimization.
  • Conduct site assessments, gap analyses, and provide recommendations for process improvements and compliance.
  • Develop process flow diagrams (PFDs), piping and instrumentation diagrams (P&IDs), and mass/energy balances.
  • Translate client requirements into actionable design scope and document decisions, open issues, and action items.
  • Identify and escalate scope changes or design deviations to project leadership.
  • Collaborate with cross-functional teams including architecture, mechanical, electrical, and construction.
  • Prepare technical reports, proposals, and presentations for internal and client stakeholders.
  • Support capital project planning including feasibility studies, equipment selection, and facility design.
  • Ensure alignment with industry standards including cGMP, FDA, EMA, and ICH guidelines.
  • Participate in advanced project activities such as:
    • Technical bid tabulations
    • Vendor package management
    • Factory acceptance testing
    • Risk assessments (e.g., HAZOP, HACCP)
    • 3D model reviews and coordination
    • Sequence of operations and functional specification reviews
  • Mentor junior engineers and design staff.
  • Lead system design programming and planning with support from senior engineers.
  • Participate in cross-discipline squad checks and drive overall project quality.
Qualifications

Minimum Qualifications

  • Bachelor's or Master's degree in Chemical Engineering or a related discipline (ABET-accredited).
  • Minimum of 5 years of experience in small molecule process engineering, preferably in a consulting or client-facing role.
  • Strong understanding of chemical synthesis, purification, and formulation processes.
  • Experience in design firm or operating company settings within a related industry.
  • Strong written and verbal communication skills.
  • Intermediate experience with applicable industry and regulatory guidance and building codes.
  • Advanced technical knowledge and experience with small molecule API manufacturing equipment and utility systems, such as chemical reactors, filters, centrifuges, dryers, vacuum pumps, scrubbers, purified water, process compressed gases, and engineered heat transfer fluid systems.
  • Experience designing and implementing engineering controls for containment of highly potent APIs.
  • Experience with cGMP practices within regulated industries (FDA, EMA, JP, etc.).

Preferred Qualifications

  • EIT or PE certification.
  • Experience coordinating and managing design within project teams and with external partners.
  • Familiarity with commissioning, startup, qualification, and troubleshooting of process systems.
  • Experience with regulatory environments and validation documentation.
  • Prior experience in engineering consulting or client services.
  • Familiarity with process safety, risk assessments, and HAZOP studies.
  • Demonstrated experience leading a small team of process engineersย on complex engineering design projects.

The pay range for a candidate selected for this position who is based in Denver is typically $103,125 to $165,000 annually. The base salary range represents the low and high end of the salary range for this position. The selected candidate's actual pay will be based on various factors, including but not limited to work location, qualifications, and relevant experience. In addition, CRB offers a total rewards package that includes comprehensive insurance coverage as well as the opportunity to participate in one or more annual incentive programs based on company and individual performance.

Additional Information

All your information will be kept confidential according to EEO guidelines.

CRB is committed to hiring and retaining a diverse workforce. We are proud to be an Equal Opportunity Employer and it is our policy to provide equal opportunity to all people without regard to race, color, religion, national origin, ancestry, marital status, veteran status, age, disability, pregnancy, genetic information, citizenship status, sex, sexual orientation, gender identity or any other legally protected category. Employment is contingent on background screening.

CRB does not accept unsolicited resumes from search firms or agencies. Any resume submitted to any employee of CRB without a prior written search agreement will be considered unsolicited and the property of CRB. Please, no phone calls or emails.

CRB offers a complete and competitive benefit package designed to meet individual and family needs.

If you are unable to complete this application due to a disability, contact this employer to ask for an accommodation or an alternative application process.