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Molecular Engineer Jobs in California (NOW HIRING)

Molecular Biologist

San Diego, CA · On-site

$57K - $98K/yr

R&D Partners is seeking to hire a Molecular Biologist in San Diego, CA. Your main responsibilities ... Scientific, Clinical Research and Engineering. Our team offers well over 200 years of combined ...

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Molecular Engineer information

See California salary details

$58.2K

$135.5K

$193.9K

How much do molecular engineer jobs pay per year?

As of Aug 21, 2026, the average yearly pay for molecular engineer in California is $135,511.00, according to ZipRecruiter salary data. Most workers in this role earn between $100,200.00 and $193,400.00 per year, depending on experience, location, and employer.

What is a molecular engineer?

A Molecular Engineer designs and manipulates molecules to develop new materials, medicines, or technologies. They apply principles from chemistry, biology, and engineering to create solutions in fields like healthcare, nanotechnology, and energy. Their work involves laboratory experiments, computer modeling, and collaboration with scientists and engineers.

What are some typical daily responsibilities for a molecular engineer?

As a Molecular Engineer, your day-to-day tasks often include designing and synthesizing new molecules or materials, conducting experiments, and analyzing data from advanced laboratory equipment. You may collaborate closely with chemists, biologists, and engineers to develop innovative solutions for fields like drug development, nanotechnology, or materials science. Documentation of experimental results, preparing technical reports, and troubleshooting laboratory protocols are also common parts of the role. This dynamic environment offers the opportunity to work on cutting-edge projects and contribute to advancements in technology and medicine.

What are the key skills and qualifications needed to thrive as a molecular engineer, and why are they important?

To thrive as a Molecular Engineer, you need a strong background in chemistry, biochemistry, molecular biology, and materials science, typically supported by an advanced degree in a relevant field. Proficiency with tools such as molecular modeling software, spectroscopic analysis, and laboratory automation systems is commonly required. Strong analytical thinking, attention to detail, effective teamwork, and the ability to communicate complex concepts clearly are highly valued soft skills. These attributes enable Molecular Engineers to innovate, ensure experimental accuracy, and contribute effectively to multidisciplinary projects.

What does a molecular engineer do?

A molecular engineer designs and develops molecules and materials at the atomic and molecular levels for applications in fields like pharmaceuticals, nanotechnology, and materials science. They use techniques such as chemical synthesis, modeling, and analysis, often working with laboratory equipment and computer simulations to create innovative solutions.

What jobs can you get with molecular engineering?

Molecular engineers can work in industries such as pharmaceuticals, biotechnology, materials science, and nanotechnology, designing and developing new materials, drugs, and chemical processes. Common roles include research scientist, process engineer, product development engineer, and quality control specialist, often requiring knowledge of chemistry, biology, and laboratory techniques.

What are the most commonly searched types of Molecular Engineer jobs in California?

The most popular types of Molecular Engineer jobs in California are:

What cities in California are hiring for Molecular Engineer jobs?

Cities in California with the most Molecular Engineer job openings:

Infographic showing various Molecular Engineer job openings in California as of August 2026, with employment types broken down into 95% Full Time, 2% Part Time, and 3% Contract. Highlights an 85% Physical, 6% Hybrid, and 9% Remote job distribution, with an average salary of $135,511 per year, or $65.1 per hour.

Scientist - In Vivo Molecular Neurotechnology

Merge

San Francisco, CA • On-site

$80 - $130/hr

Other

Posted 16 days ago


Job description

Merge Labs is a frontier research lab with the mission of bridging biological and artificial intelligence to maximize human ability, agency and experience. We’re pursuing this goal by developing fundamentally new approaches to brain-computer interfaces that interact with the brain at high bandwidth, integrate with advanced AI, and are ultimately safe and accessible for anyone to use.

About the team

Merge Labs is developing advanced approaches for interfacing with the brain at high bandwidth by inventing new technologies that combine biomolecules, physics, neuroscience and computation. Our Bio team develops our core molecular technologies, validates their performance in vitro and in vivo, and demonstrates their advanced capabilities in animal models. We build custom experimental setups and pipelines and collaborate closely with engineers and data scientists. We come up with creative ideas, solve challenging problems and innovate across disciplines.

About the role

As a Scientist - In Vivo Molecular Neurotechnology at Merge Labs, you will be an integral member of the team developing molecular biosensors and actuators for BCI technologies. You will establish experimental approaches to optimize delivery and functional expression of theses biomolecules in rodent models, characterize their tolerability and biological effects, benchmark their performance in neuroscience paradigms and generate insights to guide our next-generation design. You will collaborate with molecular engineers, data scientists and physical engineers to solve problems and come up with new ideas. Your work will lead to breakthroughs in neural interfacing technology and enable its translation into clinical applications.

In this role, you will:
  • Own and scale in vivo validation pipelines in rodents for molecular biosensors/actuators, including gene delivery, surgical workflows, sensory/behavioral paradigms, and ex vivo characterization.
  • Optimize delivery vehicles, administration methods and parameters for robust, cell-type specific expression, and quantify the outcomes at the functional and molecular scale.
  • Design and perform in vivo experiments to benchmark functional performance of biosensors/actuators in physiologically relevant neuroscience context.
  • Collaborate with hardware engineers and platform teams to develop and build custom setup incorporating novel imaging and modulation instruments.
  • Assess tolerability and biological effects through functional and molecular assays, and identify practical levers that improve long‑term tolerability while maintaining function.
  • Work closely with molecular engineers, physical engineers and data scientists to define project goals, solve problems and come up with new ideas.
  • Recruit and mentor research associate(s) as needed to expand efforts.
You might thrive in this role if you:
  • Have a PhD in Neuroscience, Biology, Bioengineering or a related field, or have equivalent experience leading research projects end‑to‑end.
  • Have expertise in benchmarking and optimizing molecular tools in vivo, including viral delivery methods, advanced surgical procedures, histology, tissue clearing or expansion microscopy.
  • Have experience in in vivo neuroscience research in rodents using sensory or behavioral experiments with simultaneous imaging and/or stimulation.
  • Love developing, implementing and troubleshooting novel techniques when they’re very new and there are many things to figure out.
  • Enjoy working with multidisciplinary teams, collaborating and communicating with experts across disciplines.
  • Are energized by a fast‑paced environment with a high sense of mission and urgency.
Nice to have
  • Experience in generating transgenic animals.
  • Experience with ex vivo methods such as activity‑based labeling or spatial sequencing.
  • Knowledge and experience in system neuroscience.
  • Hands‑on or CRO experience with larger animals.
  • Familiarity with protein or gene construct engineering and/or computational approaches.

If you're excited about this role but don't meet every qualification, please apply. As we build, we're hiring for complementary strengths to form a high‑impact team.

Merge Labs does not discriminate on the basis of race, color, religion, national origin, age, sex, sexual orientation, gender, gender identity, gender expression, marital status, physical or mental disability, medical condition, genetic information, family status, ancestry, citizenship, U.S. military (state and federal) and veteran status, or any other legally protected status. It is our intention that all applicants be given equal opportunity and that selection decisions are based on job related factors. We are an equal opportunity employer.

Pursuant to the San Francisco Fair Chance Ordinance, we will consider for employment qualified applicants with arrest and conviction records.

We are committed to providing reasonable accommodations to applicants with disabilities, and requests can be made by emailing accommodations@merge.io.

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