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Microbiome Bioinformatics Jobs (NOW HIRING)

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

... bioinformatic tools for the microbiome research community; * preparing manuscripts for peer-reviewed publication and presenting findings at national and international conferences * actively ...

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

... bioinformatic tools for the microbiome research community; * preparing manuscripts for peer-reviewed publication and presenting findings at national and international conferences; * actively ...

Responsibilities include preparing microbiome datasets, conducting bioinformatics analyses, interpreting data, and developing presentations of results for publications and scientific conferences. All ...

Responsibilities include preparing microbiome datasets, conducting bioinformatics analyses, interpreting data, and developing presentations of results for publications and scientific conferences. All ...

Responsibilities include preparing microbiome datasets, conducting bioinformatics analyses, interpreting data, and developing presentations of results for publications and scientific conferences. All ...

Postdoctoral Fellow

Chapel Hill, NC · On-site

$41K - $56K/yr

... bioinformatics audiences of all levels. Comfortable working and handling several concurrent projects. Knowledge of Python or R is preferred. Ability to analyze multi-omic data, including microbiome ...

Postdoctoral Fellow

Chapel Hill, NC

$41K - $56K/yr

... bioinformatics audiences of all levels. Comfortable working and handling several concurrent projects. Knowledge of Python or R is preferred. Ability to analyze multi-omic data, including microbiome ...

Postdoctoral Fellow

Chapel Hill, NC · On-site

$41K - $56K/yr

... bioinformatics audiences of all levels. Comfortable working and handling several concurrent projects. Knowledge of Python or R is preferred. Ability to analyze multi-omic data, including microbiome ...

AI Biologist - Metagenomics

San Francisco, CA · On-site +1

$120K - $180K/yr

Master's or PhD in microbiology, microbial ecology, bioinformatics, biology, or related field * 3+ years of hands-on research experience with microbiome or metagenomics data, demonstrated through ...

Showing results 41-60

Microbiome Bioinformatics information

See salary details

$49K

$203.5K

$400K

How much do microbiome bioinformatics jobs pay per year?

As of Sep 10, 2026, the average yearly pay for microbiome bioinformatics in the United States is $203,468.00, according to ZipRecruiter salary data. Most workers in this role earn between $78,500.00 and $400,000.00 per year, depending on experience, location, and employer.

What is microbiome bioinformatics?

Microbiome bioinformatics is a specialized field that combines computational tools and biological knowledge to analyze and interpret data about microbial communities, such as bacteria, viruses, and fungi, found in environments like the human gut, soil, or oceans. Professionals in this area use techniques like DNA sequencing, metagenomics, and statistical modeling to study how these microbial communities function and interact. The insights gained can inform research in health, agriculture, environmental science, and more. This interdisciplinary field requires knowledge of biology, computer science, and statistics.

What are the key skills and qualifications needed to thrive as a microbiome bioinformatics specialist?

To thrive as a Microbiome Bioinformatics Specialist, you need a strong background in biology, microbiology, statistics, and computational analysis, often supported by an advanced degree in bioinformatics or a related field. Familiarity with programming languages (such as Python or R), command-line tools, sequencing data analysis software, and platforms like QIIME2 or Mothur is typically required. Attention to detail, problem-solving abilities, and effective communication skills help professionals interpret complex data and collaborate with interdisciplinary teams. These skills are crucial for accurately analyzing microbial datasets and delivering actionable scientific insights that drive research and innovation.

What are some common challenges encountered when analyzing microbiome data as a bioinformatician?

One common challenge in microbiome bioinformatics is managing and interpreting large, complex datasets that often contain high levels of noise and variability. Bioinformaticians must carefully select appropriate pipelines and statistical methods to ensure accurate results, as choices in preprocessing, normalization, and taxonomic assignment can significantly impact findings. Additionally, integrating multi-omics data (like metagenomics, metatranscriptomics, or metabolomics) can be technically demanding and requires collaboration with wet lab scientists and statisticians. Staying current with rapidly evolving tools and databases is also crucial for producing robust analyses.

What is the difference between Microbiome Bioinformatics vs Microbial Genomics Specialist?

AspectMicrobiome BioinformaticsMicrobial Genomics Specialist
Required CredentialsBSc/MSc in Bioinformatics, Microbiology, or related fieldsBSc/MSc in Microbiology, Genomics, or related fields
Work EnvironmentResearch labs, biotech companies, academic institutionsResearch labs, biotech firms, genomics centers
Industry UsageAnalyzing microbiome data, ecological studiesGenomic sequencing, microbial genome analysis
Common Search/ComparisonYesYes

Microbiome Bioinformatics focuses on analyzing microbial communities within environments or hosts, emphasizing ecological and functional insights. In contrast, Microbial Genomics Specialists primarily work on sequencing and analyzing individual microbial genomes. Both roles require bioinformatics skills and often overlap in research settings, but their core focus areas differ—microbiome bioinformatics centers on community-level data, while microbial genomics emphasizes genome-level analysis.

What are the available jobs in gut microbiome bioinformatics?

Jobs in gut microbiome bioinformatics include roles such as bioinformatics analyst, research scientist, and computational biologist, focusing on analyzing microbiome sequencing data and developing algorithms. These positions often require skills in programming, data analysis, and familiarity with microbiome research tools like QIIME or MetaPhlAn. Opportunities are available in academic, biotech, and pharmaceutical sectors, with some roles requiring advanced degrees and experience in microbiology or bioinformatics.
Infographic showing various Microbiome Bioinformatics job openings in the United States as of September 2026, with employment types broken down into 86% Full Time, 12% Part Time, and 2% Contract. Highlights an 75% Physical, 4% Hybrid, and 21% Remote job distribution, with an average salary of $203,468 per year, or $97.8 per hour.

Postdoctoral Fellow

Baltimore, MD • On-site

University of Maryland, Baltimore
Colleges, Universities, and Professional Schools • 1 - 5K employees

$48K - $66K/yr

Full-time

Re-posted 18 days ago


University Of Maryland, Baltimore rating

7.7

Company rating: 7.7 out of 10

Based on 13 frontline employees who took The Breakroom Quiz

262nd of 633 rated colleges and universities


Job description

Job Description
AVAILABLE POSTDOCTORAL POSITION IN HUMAN MICROBIOME GROUP AT THE UNIVERSITY OF MARYLAND, SCHOOL OF MEDICINE, INSTITUTE FOR GENOME SCIENCES
The human microbiome study group of Dr. Bing Ma, Assistant Professor, and Dr. Jacques Ravel, Professor at the Institute for Genome Sciences (IGS, ) seeks applicants for a postdoctoral scholar position. IGS at the University of Maryland, School of Medicine is an interdisciplinary, multi-departmental team of collaborative investigators with a broad research program related to the basic and translational sciences, genomics, epigenetics, and bioinformatics. The impact of the members of IGS on the genomics field has been substantial, with more than 2000 publications during the past 26 years, which have been cited more than 300,000 times, making IGS one of the most productive institution in the region.
Qualified candidates will be enthusiastic, highly motivated and interested in studying the role of the human microbiome in relation to human health. The research in this position will focus on 1) the role of early establishment of the microbiome influence infant development; 2) the role of microbiome in interacting with host immune responses; 3) pre-clinical study of live biotherapeutics in promoting human health. This interdisciplinary position offers opportunities to address important questions in human microbiome with first access to large novel data sets from various genomic platforms. We have a strong preference for computational biologists/statistician with a deep appreciation of biological phenomena or equally, microbiologists with a solid background in computational analysis of omics data. Projects will apply computational, statistical and bioinformatics approaches to integrate multi-omics' datasets such as genome sequences, metabolomics, metagenomics, transcriptome, metatranscriptomics, bulk RNA-seq, and single-cell RNA-seq, to holistically understand the mechanistic role of human microbiome to facilitate clinical trials.
The position is largely computational and statistical and involves collaboration with wet-lab researchers providing data and is focused on fundamental biological mechanisms. The ideal applicant is expected to:
• possess a strong programming skill in at least one language in Python, R, or C/C++ and proficiency in use of Linux/Unix command-line system
• possess a demonstrable understanding of computational algorithms and statistical modeling and a working knowledge in molecular biology, microbiology, and microbial ecology
• possess a working knowledge on genomic sciences and sequencing biotechnologies
• lead or participate in projects, or participate in designs, develops, executes, and implements scientific experiments, adopt novel technologies to the sample analysis, produce and visualize data for presentation at scientific meetings and for publications.
• lead or participate in writing research and review papers, and to contribute the peer-review process and grant writing
• have strong and effective inter-personal and communication skills and ability to work effectively both as a part of the group and individually
• hold a doctoral degree in Computer Science, Mathematics, Statistics, Physics, Engineer, Genetics, Biology, Microbiology, Bioinformatics, Computational Biology, or a related field.
• PI highly values individuals with passion in taking on new challenges and strong will to learn. A fresh graduate is also encouraged to apply.
The successful candidate will benefit from a community of interactive research labs, bioinformatics experts and a variety of sequencing, and computational resources available in a world-class institute dedicated to genomic, basic, and translational research to improve human health in IGS at the University of Maryland, School of Medicine.
To apply, please send a CV, a statement of research interests (2 pages maximum), and contact information for three references to IGS-jobs.
Additional inquiries about the position can be sent to Drs. Bing Ma ( ) and Jacques Ravel ( ).
Consideration of candidates will begin upon receipt of applications and will continue until the position is filled.
If accommodations are needed for a disability, please contact Staffing & Career Services at 410-706-2606, Monday - Friday, 8:30am - 4:30pm EST. Maryland Relay can be accessed by dialing 711 (in-state) or 1-800-735-2258.
UMB is an Equal Opportunity/Affirmative Action Employer. All qualified applicants will receive consideration for employment without regard to sex, gender identity, sexual orientation, race, color, religion, national origin, disability, protected Veteran status, age, or any other characteristic protected by law or policy. For assistance related to employment, please contact the Staffing department at HRJobs@umaryland.edu.
If you anticipate needing a reasonable accommodation for a disability under the Americans with Disabilities Act (ADA), during any part of the employment process, please submit a UMB Job Applicant Accommodation Request. You may also contact HRDiversity@umaryland.edu. Please note that only inquiries concerning an ADA request for reasonable accommodation will be responded to from this email address.
Qualifications
Ph.D.

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