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Machine Learning Engineer Biotech Jobs in Philadelphia, PA

Job Summary We are seeking an experienced Machine Learning Engineer with strong hands-on expertise in building, training, deploying, monitoring, and maintaining production machine learning models.

Senior Machine Learning Engineer

Malvern, PA

$120K - $158K/yr

We are assisting our client in hiring for a Senior Machine Learning Engineer. Our client is an established SaaS company serving banks, credit unions, and fintechs. Their cloud-based platform helps ...

Senior Machine Learning Engineer

Malvern, PA · On-site

$102K - $140K/yr

Design, build, and maintain end-to-end machine learning pipelines from research through production deployment. * Engineer scalable training, inference, and retraining workflows using AWS SageMaker.

Must-Have Skills 3+ years of ML engineering experience -- model training, fine-tuning, or post-training pipelines in research or production Strong Python and deep learning proficiency (PyTorch ...

Must-Have Skills 3+ years of ML engineering experience -- model training, fine-tuning, or post-training pipelines in research or production Strong Python and deep learning proficiency (PyTorch ...

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Machine Learning Engineer Biotech information

See Philadelphia, PA salary details

$31.8K

$129.9K

$195.3K

How much do machine learning engineer biotech jobs pay per year?

As of Aug 25, 2026, the average yearly pay for machine learning engineer biotech in Philadelphia, PA is $129,939.00, according to ZipRecruiter salary data. Most workers in this role earn between $102,400.00 and $156,400.00 per year, depending on experience, location, and employer.

What does a machine learning engineer do in biotech?

A Machine Learning Engineer in biotech applies advanced algorithms and data analysis techniques to solve biological and medical problems. They work with large datasets such as genomic sequences, medical images, or clinical records to develop predictive models, automate data analysis, and uncover insights that can accelerate drug discovery, diagnostics, and personalized medicine. Their work often involves close collaboration with biologists, data scientists, and software engineers to create tools and solutions that improve healthcare outcomes. Machine Learning Engineers in this field need a strong background in both computational methods and biological sciences.

How do machine learning engineers in biotech typically collaborate with research scientists and domain experts?

Machine Learning Engineers in biotech often work closely with research scientists and domain experts to translate complex biological problems into data-driven solutions. This collaboration involves regular meetings to understand experimental data, refine project goals, and iterate on model development based on domain feedback. Engineers are expected to communicate technical concepts clearly, adapt models to fit scientific needs, and help validate results alongside laboratory teams. This interdisciplinary environment fosters innovation but also requires flexibility and strong communication skills.

What are the key skills and qualifications needed to thrive as a machine learning engineer in biotech?

To thrive as a Machine Learning Engineer in Biotech, you need a solid background in computer science, statistics, and biology, often with an advanced degree in a related field. Experience with programming languages such as Python or R, machine learning frameworks like TensorFlow or PyTorch, and familiarity with bioinformatics tools are typically required. Strong problem-solving, communication, and interdisciplinary collaboration skills set standout candidates apart. These capabilities are crucial for developing effective models that drive scientific innovation and advance biotechnological research.

What is the difference between Machine Learning Engineer Biotech vs Data Scientist Biotech?

AspectMachine Learning Engineer BiotechData Scientist Biotech
Required CredentialsBachelor's or Master's in Computer Science, Data Science, or related; knowledge of ML frameworksBachelor's or Master's in Data Science, Statistics, or related; strong analytical skills
Work EnvironmentDevelops ML models, coding, deploying algorithms in biotech R&DAnalyzes biological data, interprets results, creates reports
Employer & Industry UsageBiotech firms, pharma companies, research labsBiotech companies, healthcare, research institutions

While both roles work with biological data, Machine Learning Engineers focus on developing and deploying ML algorithms, whereas Data Scientists analyze and interpret biological datasets to inform research and decision-making in biotech settings.

What are popular job titles related to Machine Learning Engineer Biotech jobs in Philadelphia, PA?

For Machine Learning Engineer Biotech jobs in Philadelphia, PA, the most frequently searched job titles are:

Infographic showing various Machine Learning Engineer Biotech job openings in Philadelphia, PA as of August 2026, with employment types broken down into 1% As Needed, 75% Full Time, 22% Part Time, and 2% Contract. Highlights an 88% Physical, 2% Hybrid, and 10% Remote job distribution, with an average salary of $129,939 per year, or $62.5 per hour.

Machine Learning Engineer

Compunnel

Philadelphia, PA • On-site

Contractor

This job post has expired 4 days ago. Applications are no longer accepted.


Job description

Job Summary
We are seeking an experienced Machine Learning Engineer with strong hands-on expertise in building, training, deploying, monitoring, and maintaining production machine learning models. The role focuses on the end-to-end Machine Learning lifecycle, including data engineering, model development, offline evaluation, production deployment, monitoring, retraining, and A/B testing. The ideal candidate will have strong experience with Python, PySpark, large-scale data platforms, recommendation and ad personalization models, and production ML systems.
Key Responsibilities
• Design, build, train, validate, and deploy production Machine Learning models.
• Build recommendation and ad personalization models and support offline model evaluation and A/B testing in production.
• Perform feature engineering, feature selection, data preprocessing, and model optimization.
• Develop predictive models using Random Forest, XGBoost, CatBoost, Gradient Boosting, Ensemble Models, Regression, and Classification algorithms.
• Conduct hyperparameter tuning, cross-validation, and model evaluation using appropriate statistical and business metrics.
• Deploy production-ready inference pipelines and monitor models for drift, performance degradation, and retraining requirements.
• Build scalable PySpark pipelines for ingesting, cleaning, transforming, and preparing large enterprise datasets.
• Develop efficient ETL/ELT pipelines supporting production ML workflows.
• Optimize Spark jobs for performance and scalability.
• Work with Databricks, Snowflake, Delta Lake, or similar big data platforms.
• Write clean, maintainable, production-quality Python code.
• Build scalable REST APIs and backend services supporting ML inference.
• Participate in code reviews and follow software engineering best practices.
• Build automated testing, deployment, monitoring, and retraining pipelines.
• Deploy ML models into production environments and implement monitoring and alerting strategies.
• Track model performance using appropriate business and technical metrics.
• Collaborate with Data Engineering and Software Engineering teams to operationalize ML solutions.
• Troubleshoot production issues and optimize model and system performance.
• Mentor junior Machine Learning Engineers and provide technical guidance on model development and production best practices.
Required Qualifications
• 5+ years of hands-on Machine Learning Engineering experience.
• Strong expertise in Python programming.
• Strong experience writing production PySpark code.
• Strong understanding of data science, statistics, and Machine Learning fundamentals.
• Strong understanding of deep learning and NLP fundamentals.
• Experience building and deploying production Machine Learning models.
• Experience with Databricks, Snowflake, or similar large-scale data platforms.
• Strong understanding of the complete ML lifecycle, including data preparation, feature engineering, model training, hyperparameter tuning, model evaluation, production deployment, monitoring, and retraining.
• Experience developing scalable data pipelines and distributed data processing solutions.
• Strong SQL skills.
• Experience with Scikit-learn and Machine Learning algorithms including Random Forest, XGBoost, CatBoost, Gradient Boosting, Regression, and Classification.
• Experience with model evaluation, feature engineering, hyperparameter tuning, cross-validation, model monitoring, and drift detection.
• Experience with ETL/ELT and distributed data processing.
• Experience working in Agile software development environments.
• Experience writing production-quality Python code and building scalable ML solutions.
• Experience deploying and monitoring Machine Learning models in production environments.
Preferred Qualifications
• Experience building transformer-based recommendation models.
• Familiarity with multi-armed bandit approaches.
• Experience with Retrieval-Augmented Generation (RAG) solutions.
• Experience with LangChain or LangGraph.
• Experience integrating LLM APIs into enterprise applications.
• Experience with Vector Databases.
• Experience with MLOps tools such as MLflow.
• Experience with cloud platforms including AWS or Azure.
• Experience with Docker.
• Experience with CI/CD pipelines and Git.
• Experience with Generative AI, RAG, or AI agents.

Compunnel logo

About Compunnel

Sourced by ZipRecruiter

Compunnel is a well-known company located in Plainsboro, NJ, US, recognized in the industry of IT Services and Solutions. Established in 1989, Compunnel offers a suite of services that help businesses integrate technology efficiently into their operations, a recognizable name in the IT solutions sphere for over three decades. The company’s service portfolio includes Digital Transformation, Business Intelligence, Cloud Services, Cybersecurity, and Application Modern Services, among others. Guided by its mission "to innovate with industry-leading digital solutions and disruptive tech strategies for unimagining business growth," the company underlines its commitment to offering out-of-the-box solutions to its clients. Remarkable achievements of the company include serving more than 30 Fortune 500 companies and providing job opportunities for over 50,000 individuals.

Industry

It services

Company size

501 - 1,000 Employees

Headquarters location

Plainsboro, NJ, US

Year founded

1994

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