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Lead Automation Engineer Jobs in Boston, MA (NOW HIRING)

Sr Engineer, Automation

Canton, MA

$110K - $144K/yr

The Senior Automation Engineer will lead automation strategy, support deviation investigations and CAPAs, enable process improvements, support technology transfer activities, and serve as the primary ...

Sr Engineer, Automation

Canton, MA · On-site

$110K - $144K/yr

The Senior Automation Engineer will lead automation strategy, support deviation investigations and CAPAs, enable process improvements, support technology transfer activities, and serve as the primary ...

Sr Engineer, Automation

Canton, MA · On-site

$110K - $144K/yr

The Senior Automation Engineer will lead automation strategy, support deviation investigations and CAPAs, enable process improvements, support technology transfer activities, and serve as the primary ...

Lead Automation Tester

Dorchester, MA

$48.25 - $63.75/hr

As a Test Automation Lead, the candidate will have the opportunity to lead the design and ... lead team of test engineers, setting clear expectations Strong oral and written communication ...

Lead Automation Tester

Dorchester, MA · On-site

$48.25 - $63.75/hr

... to lead team of test engineers, setting clear expectations • Strong oral and written ... automation : selenium and appium experience needed • Strong test lead experience Additional ...

The GXP Lead Automation Technician will be responsible for ensuring the BMS and EMS are being ... Coordinate with the reliability engineering department to ensure that appropriate preventive and ...

... lead tasks and activities related to project engineering, including large and transformational projects; serve as consulting to automation engineering and site leadership on major functionality ...

New

Job Title Automation Engineer Summary Our Purpose: At C&W Services, we live by the belief that ... You may lead and/or assist other technicians with their development through continuity of knowledge ...

Job Title Automation Engineer Summary At C&W Services, we live by the belief that "Better Never ... You may lead and/or assist other technicians with their development through continuity of knowledge ...

You will lead DeltaV projects at a variety of customer sites from large scale greenfield ... Write automation based engineering proposals at the request of Account Management and the ...

You will lead DeltaV projects at a variety of customer sites from large scale greenfield ... Write automation based engineering proposals at the request of Account Management and the ...

Principal Automation Engineer

Lexington, MA · On-site

$159K - $242K/yr

... lead tasks and activities related to project engineering, including large and transformational projects; serve as consulting to automation engineering and site leadership on major functionality ...

Senior Automation Engineer

Plymouth, MA

$113K - $148K/yr

The Senior Automation Engineer role requires an individual have a diverse engineering skill set ... Lead or work on a project team responsible for the design, configuration, and testing of continuous ...

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Showing results 1-20

Lead Automation Engineer information

See Boston, MA salary details

$46.2K

$134.6K

$196.3K

How much do lead automation engineer jobs pay per year?

As of Aug 8, 2026, the average yearly pay for lead automation engineer in Boston, MA is $134,644.00, according to ZipRecruiter salary data. Most workers in this role earn between $111,500.00 and $146,800.00 per year, depending on experience, location, and employer.

What is the difference between Lead Automation Engineer vs Automation Engineer?

AspectLead Automation EngineerAutomation Engineer
CredentialsBachelor's degree in engineering or related field; certifications like ISTQB, Certified Automation ProfessionalBachelor's degree in engineering or related field; certifications like ISTQB, Certified Automation Professional
Work EnvironmentLeading automation projects, coordinating teams, designing automation strategiesDeveloping and implementing automation scripts, testing automation processes
Industry UsageUsed across software, manufacturing, and industrial sectors for overseeing automation effortsPrimarily in software testing, manufacturing, and process automation roles

The main difference between a Lead Automation Engineer and an Automation Engineer lies in their responsibilities. The Lead Automation Engineer oversees automation projects, manages teams, and develops strategies, while the Automation Engineer focuses on creating and executing automation scripts and processes. Both roles require similar credentials but differ in scope and leadership responsibilities.

What is a lead automation engineer?

A Lead Automation Engineer is a senior technical professional responsible for designing, implementing, and overseeing automation systems in various industries, such as manufacturing or software development. They lead teams of engineers, set automation strategies, and ensure that automated processes operate efficiently and safely. Their role often involves coordinating with other departments to integrate automation solutions, troubleshooting complex systems, and mentoring junior engineers. Lead Automation Engineers play a crucial part in increasing productivity, reducing manual labor, and improving overall system performance.

What are some common challenges lead automation engineers face when managing cross-functional projects?

Lead Automation Engineers often encounter challenges such as aligning automation goals with shifting business priorities, coordinating between software development and operations teams, and ensuring consistent communication across departments. Balancing technical responsibilities with leadership duties, such as mentoring junior engineers and managing project timelines, is also common. Successfully navigating these challenges requires strong organizational skills, adaptability, and proactive stakeholder engagement.

What are the key skills and qualifications needed to thrive as a lead automation engineer?

To thrive as a Lead Automation Engineer, you need deep expertise in automation frameworks, scripting languages (such as Python or Java), and a degree in computer science or a related field. Familiarity with tools like Selenium, Jenkins, Docker, and CI/CD systems, as well as relevant certifications (e.g., ISTQB), is typically required. Strong leadership, problem-solving, and communication skills help you manage teams and collaborate across departments effectively. These skills ensure efficient automation processes, high-quality software releases, and cohesive teamwork within development environments.
What are popular job titles related to Lead Automation Engineer jobs in Boston, MA? For Lead Automation Engineer jobs in Boston, MA, the most frequently searched job titles are:
Infographic showing various Lead Automation Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 85% Full Time, 11% Part Time, and 4% Contract. Highlights an 92% Physical, 2% Hybrid, and 6% Remote job distribution, with an average salary of $134,644 per year, or $64.7 per hour.

$110K - $144K/yr

Full-time

Re-posted 27 days ago


Job description


 Preparedness today, safer tomorrow.

 Emergent is a leading public health company that delivers protective and life-saving solutions to
 communities around the world.  Here, you will join passionate professionals where our culture is informed
 by our values and commitment to protecting and saving lives.

JOB SUMMARY

The Senior Automation Engineer is the site-level technical authority and owner for all aspects of automation, control systems, and computerized systems at the Canton, MA GMP Vaccine Drug Substance manufacturing site. This role is accountable for ensuring the reliability, compliance, lifecycle management, and continuous improvement of process, utility, and facility automation systems supporting commercial and clinical vaccine manufacturing. 

The position requires deep hands-on expertise with GMP automation in biologics/vaccine environments and close collaboration with Manufacturing, MSAT, Quality, Validation, Facilities, and Capital Projects teams. The Senior Automation Engineer will lead automation strategy, support deviation investigations and CAPAs, enable process improvements, support technology transfer activities, and serve as the primary subject matter expert (SME) during internal and external regulatory inspections.

ESSENTIAL FUNCTIONS

Reasonable accommodations will be made to enable individuals with disabilities to perform the essential functions.

  • Serve as the automation system owner for the Canton site, with end-to-end responsibility for process control, PLC/DCS, SCADA, HMI, Batch systems, Building Management Systems (BMS), historians, and associated infrastructure throughout their lifecycle (design through retirement).
  • Ensure all automation systems remain in a validated state in compliance with GMP, GAMP 5, 21 CFR Parts 210, 211, and Part 11 requirements, including authoring, reviewing, and approving system lifecycle documentation (URS, FRS, DDS, risk assessments, commissioning and qualification protocols, reports).
  • Provide technical leadership for troubleshooting complex automation, control, and integration issues impacting manufacturing operations, utilities, and facilities; support manufacturing in real-time to minimize downtime and ensure product supply.
  • Lead and support deviation investigations, root cause analysis, and CAPA implementation related to automation and computerized systems.
  • Drive continuous improvement and process optimization initiatives through automation enhancements, risk reduction, standardization, and modernization of legacy systems.
  • Actively support process improvement, MSAT, and technology transfer efforts by ensuring automation readiness, scalability, data integrity, and alignment with new or modified manufacturing processes.
  • Manage and oversee automation activities for capital projects, including scope development, vendor selection, design review, integration, commissioning, qualification, and handover to operations.
  • Develop and maintain site automation standards, procedures, SOPs, PMs, and engineering best practices; provide training to operations, engineering, and maintenance personnel as required.
  • Coordinate and manage external system integrators, vendors, consultants, and contractors to ensure delivery meets safety, quality, schedule, and budget expectations.
  • Serve as the site automation SME during audits, inspections, and regulatory interactions, including direct engagement with regulatory agencies as required.
  • Partner closely with Quality, Validation, IT, and Engineering to support change control, data integrity, cybersecurity, and inspection readiness activities.
  • Provide technical mentorship and guidance to other engineers and technicians, contributing to capability building and knowledge retention at the site.

The above statements are intended to describe the nature of work performed by those in this job and are not an exhaustive list of all duties. Nothing in this job description restricts management's right to assign or reassign duties and responsibilities to this job at any time which reflects management's assignment of essential functions.

MINIMUM EDUCATION, EXPERIENCE, SKILLS

  • Due to the nature of this role and our manufacturing environment, employees are required to meet certain health and safety requirements, including the ability to adhere to the Company's vaccination policies where job-related and consistent with applicable law. We are committed to providing a fair and inclusive hiring process and will evaluate reasonable accommodation requests for medical disabilities, or sincerely held religious beliefs, in accordance with applicable laws.Bachelor's degree in Electrical, Chemical, Mechanical, Biochemical Engineering, or a related engineering discipline; advanced degree preferred.
  • Minimum of 8 years of progressive automation engineering experience within a GMP-regulated pharmaceutical, biologics, or vaccine manufacturing environment; direct Drug Substance (DS) and/or vaccine experience strongly preferred.
  • Demonstrated expertise in GMP automation, computer system validation (CSV), and commissioning and qualification of manufacturing systems.
  • Strong knowledge of regulatory and industry standards including GMP, GAMP 5, FDA 21 CFR Parts 210/211, Part 11, and data integrity principles.
  • Hands-on experience programming, configuring, and troubleshooting PLCs and HMIs (AllenBradley/Rockwell preferred), SCADA systems, batch control platforms, and process instrumentation.
  • Proven experience with Building Management Systems (BMS), process historians, and integration of automation systems across manufacturing, utilities, and facilities.
  • Experience with change management systems, deviation management, CAPAs, and quality systems within regulated environments.
  • Familiarity with ERP/CMMS platforms (e.g., SAP) for work orders, calibration, and maintenance management.
  • Proven ability to work cross-functionally, communicate effectively with technical and non-technical stakeholders, and lead complex technical discussions.
  • Strong analytical, problem-solving, and decision-making skills with the ability to prioritize in a fast-paced manufacturing environment.

**This position is relocation eligible within the United States**

If the hiring manager expresses an interest in interviewing you for the open position, you must discuss your interest in the open position with your current manager prior to an interview being scheduled.

U.S. Base Pay Ranges and Benefits Information

The estimated annual base salary as a new hire for this position ranges from $150,000 to $176,000. Individual base pay depends on various factors such as applicant's education, experience, skills, and abilities, as well as internal equity and alignment with market data.  The salary may also be adjusted based on applicant's geographic location.  Certain roles are eligible for additional incentive compensation, including merit increases, annual bonus, [and/or long-term incentives in the form of stock options.]

Additionally, Emergent offers a comprehensive benefits package*.  Information regarding additional benefits can be found here:  https://www.emergentbiosolutions.com/careers/life-at-emergent

(*Eligibility for benefits is governed by the applicable plan documents and policies).

If you are selected for an interview, please feel welcome to speak to a Human Resources Partner about our compensation philosophy and available benefits.