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Laboratory Automation Engineer Jobs in New York (NOW HIRING)

RFCUNY

Postdoc Hardware AIBIOME

Manhattan, NY · On-site

$60 - $73/hr

Scientific instrument control and laboratory automation * Embedded systems development * Hardware programming in C/C++, Python, and/or LabVIEW API development and software integration

New

MSD

Specialist, Automation Engineering

Rahway, NJ · On-site

The Formulation, Laboratory, and Experimentation (FLEx) Center in Rahway, New Jersey, includes a ... The Specialist, Automation Engineering - role will provide end-to-end automation engineering ...

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Laboratory Automation Engineer information

See New York salary details

$40.5K

$117.2K

$178.3K

How much do laboratory automation engineer jobs pay per year?

As of Sep 3, 2026, the average yearly pay for laboratory automation engineer in New York is $117,200.00, according to ZipRecruiter salary data. Most workers in this role earn between $94,600.00 and $135,100.00 per year, depending on experience, location, and employer.

What does a laboratory automation engineer do?

A Laboratory Automation Engineer designs, develops, and maintains automated systems used in laboratories to streamline repetitive tasks and improve accuracy. They work with robotics, software, and instrumentation to automate processes such as sample handling, data collection, and analysis. Their role often involves troubleshooting equipment, optimizing workflows, and collaborating with scientists to understand laboratory needs. By automating routine procedures, they help increase throughput and ensure consistent results, allowing researchers to focus on more complex tasks.

What are the key skills and qualifications needed to thrive as a laboratory automation engineer?

To thrive as a Laboratory Automation Engineer, you need a strong background in engineering, biology or chemistry, with expertise in automation technologies and laboratory processes, often supported by a relevant degree. Familiarity with laboratory information management systems (LIMS), programming languages like Python or C#, and automation platforms such as Tecan or Hamilton is typically required. Strong problem-solving skills, attention to detail, and effective communication abilities help drive innovation and collaboration. These competencies are crucial to ensure efficient, reliable, and scalable laboratory operations that support scientific discovery and regulatory compliance.

How does a laboratory automation engineer typically collaborate with scientists and IT specialists?

Laboratory Automation Engineers regularly work alongside scientists to understand experimental workflows and identify opportunities for automation. They also collaborate with IT specialists to ensure that lab instruments and software integrate seamlessly with data management systems. Effective communication is key, as the engineer must translate scientific requirements into technical solutions while ensuring data integrity and system reliability. This cross-functional teamwork helps optimize lab efficiency and supports scientific discovery.

What is the difference between Laboratory Automation Engineer vs Laboratory Technician?

AspectLaboratory Automation EngineerLaboratory Technician
CredentialsBachelor's degree in engineering, automation, or related fieldAssociate's degree or certification in laboratory procedures
Work EnvironmentDesign, develop, and maintain automation systems in labsPerform routine lab tests and sample processing
Industry UsageUsed in biotech, pharmaceutical, and research labs for automationCommon in clinical, medical, and research labs for sample handling

The main difference is that Laboratory Automation Engineers focus on designing and maintaining automation systems, requiring engineering skills and certifications. Laboratory Technicians perform routine lab tasks and sample processing, with a focus on laboratory procedures. Both roles are essential in lab operations but differ in technical scope and responsibilities.

What are popular job titles related to Laboratory Automation Engineer jobs in New York?

For Laboratory Automation Engineer jobs in New York, the most frequently searched job titles are:

What job categories do people searching Laboratory Automation Engineer jobs in New York look for?

The top searched job categories for Laboratory Automation Engineer jobs in New York are:

Laboratory Automation Engineer jobs near you
Infographic showing various Laboratory Automation Engineer job openings in New York as of August 2026, with employment types broken down into 90% Full Time, 6% Part Time, and 4% Contract. Highlights an 86% Physical, 4% Hybrid, and 10% Remote job distribution, with an average salary of $117,200 per year, or $56.3 per hour.

Automation Engineer - 2nd Shift

Amneal Pharmaceuticals

Piscataway, NJ • On-site

$90K - $100K/yr

Full-time

Medical, Retirement

Re-posted 25 days ago

Amneal Pharmaceuticals rating

6.7

Company rating: 6.7 out of 10

Based on 12 frontline employees who took The Breakroom Quiz

74th of 86 rated pharmaceutical

Job description


Description:
The Automation Engineer is responsible for overseeing and optimizing automation systems to improve production efficiency and reduce operational costs. This position involves designing, integrating, and implementing advanced hardware and software solutions within pharmaceutical manufacturing facilities.
Essential Functions:
  • Develop Control Systems based on coordination with OEM, in order to automate upstream and downstream processing equipment, including Mixers, Coaters, Pouchers, Cartoners, Packaging Lines, Laboratory equipment, facility systems, stability Chambers, BMS, CIP (Clean in Place) and SIP (Steam in Place), Water System Controls, Tablet Press, Fluid Bed Dryers, Granulators, Vision System etc.
  • Perform programming, qualification and validation of digital process automation systems. Provide 24x7 on-call Automation Support, including technical support and troubleshooting functions. Perform formal systems acceptance testing, including software simulation and hardware and equipment acceptance in pharmaceutical manufacturing facilities.
  • Properly complete documentation for accurate recordkeeping, according to the Engineering Department's procedures,Assist with updating departmental procedures; monitor equipment, and ensure preventative maintenance is being done, handle calibration monitoring, engineering analysis. Assist with training coworkers on using equipment.
  • Read, understand, verify and develop P&ID, Engineering Layout, Engineering Drawings and Engineering documents.
  • Implement projects according to Good Automated Manufacturing Practice (GAMP) guide for validation of automated systems in pharmaceutical manufacture.
  • Handle logistics and coordination of electrical construction activities as per engineering standards, vendor development, with the various departments like manufacturing, QA, QC, R&D for the engineering and Validation Aspects; maintain VMP and other GMP documents, Support Process Validation and Development Studies. Coordinate and ensure Safety Aspects.
  • Perform hands on field installation, operational start-up, calibration, and commissioning activities.
  • Support Change Control Management, updating documentation for client, including test plans and production implementation.
  • Apply batch coding standards to automation process, including design of batch operations, unit procedures, and procedural recipe components to aforementioned processes.

Additional Responsibilities:
  • Assists with engineering projects and performs other duties as assigned.

Qualifications
Education:
  • Bachelors Degree (BA/BS) Electrical Engineering or Related Field - Required

Experience:
  • 3 years or more in Experience working with hydraulics, pneumatics, programmable logic controllers, electrical circuits, electrical machinery and human-machine interfaces within industrial and manufacturing plant, food or pharmaceutical processing facilities.
  • 3 years or more in w/ Masters in Electrical Engineering or Related Field

Specialized Knowledge:
  • Fully comprehend, verify, and develop P&ID, Engineering Layout, Electrical/Controls Diagram, Engineering Drawings and Engineering document's, PLC, HMI, SCADA, VFD and PID Controller ProgrammingProject Management

The base salary for this position ranges from $90,000 to $100,000 per year. In addition, Amneal offers a short-term incentive opportunity, such as a bonus or performance-based award, with this position within the first 12 months. Amneal ranges reflect the Company's good faith estimate of what Amneal reasonably believes that it will pay for said position at the time of the posting. Individual compensation will ultimately be determined based on a variety of relevant factors, including but not limited to, qualifications, experience, geographic location and other relevant skills. At the heart of our Total Rewards commitment is a comprehensive, flexible and competitive benefits program for eligible positions that enables you to choose the plans and coverage that meet your personal needs. This includes above-market, diverse and robust health and insurance benefits to meet the varied needs of our employees as well as a significant 401(k) matching contribution to help our employees save for retirement. We also promote employee well-being with programs that help you enjoy your career alongside life's many other commitments and opportunities.
About Us
Amneal is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex (including pregnancy, childbirth, or related medical conditions), sexual orientation, gender identity, national origin, age, disability, genetic information, protected veteran status, or any other characteristic protected by applicable federal, state, or local laws. If you require a reasonable accommodation to complete the application process or to participate in any part of the hiring process, please contact us at accommodations@amneal.com. Requests will be handled confidentially and in accordance with applicable laws.

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