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Lab Automation Engineer Jobs in Manhattan, NY (NOW HIRING)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

About Automation Engineering Roles at Danaher Are you energized by solving technical problems ... Experience with hands-on lab testing and technical documentation (e.g., lab report generation)

Your expertise will shape both the physical and systemic implementation of lab automation. You will collaborate closely with Roboticists, Mechatronics, Mechanical Engineers, and Material Scientists ...

Perception Engineer

New York, NY ยท On-site

$175K - $225K/yr

Your expertise will shape both the physical and systemic implementation of lab automation. You will collaborate closely with Roboticists, Mechatronics, Mechanical Engineers, and Material Scientists ...

Your expertise will shape both the physical and systemic implementation of lab automation. You will collaborate closely with Roboticists, Mechatronics, Mechanical Engineers, and Material Scientists ...

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Lab Automation Engineer information

See Manhattan, NY salary details

$18

$52

$79

How much do lab automation engineer jobs pay per hour?

As of Aug 2, 2026, the average hourly pay for lab automation engineer in Manhattan, NY is $52.88, according to ZipRecruiter salary data. Most workers in this role earn between $40.58 and $66.35 per hour, depending on experience, location, and employer.

What does a Lab Automation Engineer do?

A Lab Automation Engineer designs, develops, and maintains automated systems used in laboratory environments to improve efficiency, accuracy, and reproducibility of experiments. They work with robotics, software, and laboratory instruments to streamline workflows for research, diagnostics, or manufacturing processes. Their responsibilities often include programming automation scripts, integrating hardware and software, troubleshooting system issues, and collaborating with scientists to optimize lab operations.

What are the key skills and qualifications needed to thrive in the Lab Automation Engineer position, and why are they important?

To thrive as a Lab Automation Engineer, you need a solid background in engineering or life sciences, experience with laboratory workflows, and proficiency in programming and automation. Familiarity with tools such as liquid handling robots, laboratory information management systems (LIMS), scripting languages (like Python or VBA), and certifications like Six Sigma or CLIA can be highly advantageous. Strong problem-solving abilities, teamwork, and effective communication skills set top performers apart. These skills are crucial for designing efficient automated systems, maintaining equipment, and ensuring seamless lab operations in complex, collaborative environments.

What are some common challenges Lab Automation Engineers face in their daily work?

Lab Automation Engineers often encounter challenges such as troubleshooting integration issues between new automation equipment and existing lab systems, as well as optimizing protocols for maximum efficiency. Adjusting to rapidly evolving technology and managing the customization of automated solutions for diverse experiments are also common aspects of the role. Collaboration with scientists, IT specialists, and quality control teams is essential to ensure that automation meets both technical and regulatory requirements. Successfully navigating these challenges requires adaptability, communication, and a solution-oriented mindset.

What are popular job titles related to Lab Automation Engineer jobs in Manhattan, NY? For Lab Automation Engineer jobs in Manhattan, NY, the most frequently searched job titles are:
What job categories do people searching Lab Automation Engineer jobs in Manhattan, NY look for? The top searched job categories for Lab Automation Engineer jobs in Manhattan, NY are:
Infographic showing various Lab Automation Engineer job openings in Manhattan, NY as of July 2026, with employment types broken down into 93% Full Time, 4% Part Time, and 3% Contract. Highlights an 83% Physical, 6% Hybrid, and 11% Remote job distribution, with an average salary of $109,993 per year, or $52.9 per hour.

Senior Scientist, DDT-Lab Automation, Laboratory Automation Engineer

MSD

Rahway, NJ โ€ข On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted yesterday


Job description

Job Description

Job Description: Senior Scientist, DSCS Digital Technologies-Laboratory Automation, Laboratory Automation Engineer

We are seeking a Senior Scientist to join our DSCS Digital Technologies (DDT) organization, within Development Sciences and Clinical Supply (DSCS), located in Rahway, NJ.

Primary Responsibilities:

We are a global biopharmaceutical leader with a portfolio of prescription medicines, oncology,vaccinesand animal health products. We are driven by our purpose to develop and deliver innovative products that save and improve lives. With 69,000 employeesoperatingin more than 140 countries, we offerstate-of-the-artlaboratories, plants and offices that are designed to inspire our employees as we learn,developand grow in our careers. We are proud of our over 125 years of service to humanity and continue to be one of the world's biggest investors in Research & Development.

In the Development Sciences and Clinical Supply (DSCS) organization, we believe digital is the force multiplier that enables faster experiments, smarter decisions, more robust supply chains, and isultimately redefininghow we bring medicines to patients.

Within DSCS, theDSCSDigital Technologies(DDT)teamis building the next generation of data-rich, connected lab environments-where hardware, software, and AI-driven tools work together to accelerate pharmaceutical development. Our goal is simple but ambitious: embed advanced digital capabilities into the DNA of how we work. We believe this future starts witha strong foundationof laboratory tools: innovative robotics,process analytical technology (PAT), high-throughput technologies,reliable instrumentation, and integrated systems that seamlessly transition data from the physical labs to the digital world. We believe innovation is fueled by teams that come together to buildtechnologiesthat trulyimpacthow our scientists conduct research.We'relooking for aSenior Scientistto help make this vision real.

In this role,the chosen candidatewill work with a team of scientists tasked withidentifying, developing, and deployingdigital and data-richtechnologiesaimed at improving themanner in whichprocess, product, and analyticalunderstanding is gathered. Thetoolsthatwe develop are as the team developing them, and in thisSeniorScientistrole,the chosen candidatewillleveragedigitaltechnologiestoenablechemistry, manufacturing, and controls (CMC)activitiesacrossour company's small molecule, biologics, and vaccines portfolio.This includes, but is not limited to, utilizing lab automation and high throughput technologies to contribute to the design, build, and maintenance of lab automation platforms and developing next-generation digitally integrated lab automation solutions to support current and future DSCS development.

HowYou'llMake an Impact

  • Design the lab of the futurethrough the development of high throughputtechnologiesthat integrate robotics,analyticalinstrumentation, and software into cohesive, high-performing solutions- leveraging digital tools (e.g. Agentic AI) where possible to enable rapid development cycles
  • Deliver world-renownedscienceby partnering with researchers to understand experimental needs and convert them into scalabledigitalworkflows
  • Work at the intersection ofmultipledisciplines, collaborating with experts in automation, data science, modeling, IT, andthe CMC community at large
  • Lead high-impact projectsfrom concept through deployment, working across teams and stakeholders to deliver meaningful outcomes
  • Continuously improveexistingdigital technologies and automation platformsto enhance performance, usability, and reliability
  • Empower othersby providing hands-onpartnership,support, troubleshooting, and training to scientists using thesetechnologies

Education Minimum Requirement:

  • Ph.D. in Chemical/Biochemical/Biomedical Engineering, Chemistry, Biology, Pharmaceutical Sciences, or a closely-related field (with expected graduation by September 2026)
  • M.S. in Chemical/Biochemical/Biomedical Engineering, Chemistry, Biology, Pharmaceutical Sciences, or a closely-related field with at least 2 years of industrial/pharmaceutical or relevant experience
  • B.S. in Chemical/Biochemical/Biomedical Engineering, Chemistry, Biology, Pharmaceutical Sciences, or a closely-related field with at least 4 years of industrial/pharmaceutical or relevant experience

Required Experience and Skills:

  • Experience in a lab-based setting, working with lab automation and equipment integration
  • Proficient in designing, validating, optimizing, and operating robotic liquid handlers, robotic workcells, and other automation platforms
  • Experience with scripting/programming in one or more of the following: Python, C#, VBA, JavaScript, R, following accepted best practices (version control, design patterns, clean code)
  • Experience with one or more commercial lab automation platforms, specifically front-end software, such as: Tecan, Biomek, Formulatrix, Hamilton, Thermo or HighRes Biosolutions liquid handlers
  • Demonstrated ability to work in an entrepreneurial and independent manner while being a team player
  • Collaboration and communication skills with the ability to navigate conversations with technicians and vendors

Preferred Experience and Skills:

  • Experience integrating laboratory instruments with custom or commercial software solutions
  • Understanding of (bio)pharmaceutical process research and development (e.g. drug substance development, drug product development, and/ or analytical development)
  • Experience with Benchling, Signals, or other commercial laboratory notebook software
  • Experience with ThermoFisher Momentum, Biosero Green Button Go, or HighRes Biosolutions Cellario robotic scheduling software
  • Deep knowledge about laboratory automation software, firmware, hardware, and their integration into end-to-end solutions
  • Ability to recognize, prototype, and deploy innovative technologies in laboratory automation
  • Understanding of data science and AI/ML concepts and their application to laboratory automation
  • Experience leading technical projects with cross-functional teams

#eligibleforerp

Required Skills:

Automated Equipment, Automated Liquid Handling Systems, Data Analysis, Equipment Automation, High-Throughput Screening, Innovative Thinking, Interpersonal Relationships, Laboratory Automation, Process Optimization, Python (Programming Language), Robotic Liquid Handlers, R Programming

Preferred Skills:

Current Employees apply HERE

Current Contingent Workers apply HERE

US and Puerto Rico Residents Only:

Our company is committed to inclusion, ensuring that candidates can engage in a hiring process that exhibits their true capabilities. Please click here if you need an accommodation during the application or hiring process.

As an Equal Employment Opportunity Employer, we provide equal opportunities to all employees and applicants for employment and prohibit discrimination on the basis of race, color, age, religion, sex, sexual orientation, gender identity, national origin, protected veteran status, disability status, or other applicable legally protected characteristics.As a federal contractor, we comply with all affirmative action requirements for protected veterans and individuals with disabilities. For more information about personal rights under the U.S. Equal Opportunity Employment laws, visit:

EEOC Know Your Rights

EEOC GINA Supplement

We are proud to be a company that embraces the value of bringing together, talented, and committed people with diverse experiences, perspectives, skills and backgrounds. The fastest way to breakthrough innovation is when people with diverse ideas, broad experiences, backgrounds, and skills come together in an inclusive environment. We encourage our colleagues to respectfully challenge one another's thinking and approach problems collectively.

Learn more about your rights, including under California, Colorado and other US State Acts

The salary range for this role is

$117,000.00 - $184,200.00

This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An employee's position within the salary range will be based on several factors including, but not limited to relevant education, qualifications, certifications, experience, skills, geographic location, government requirements, and business or organizational needs.

The successful candidate will be eligible for annual bonus and long-term incentive, if applicable.

We offer a comprehensive package of benefits. Available benefits include medical, dental, vision healthcare and other insurance benefits (for employee and family), retirement benefits, including 401(k), paid holidays, vacation, and compassionate and sick days. More information about benefits is available at https://jobs.merck.com/us/en/compensation-and-benefits.

You can apply for this role through https://jobs.merck.com/us/en (or via the Workday Jobs Hub if you are a current employee). The application deadline for this position is stated on this posting.

San Francisco Residents Only:We will consider qualified applicants with arrest and conviction records for employment in compliance with the San Francisco Fair Chance Ordinance

Los Angeles Residents Only:We will consider for employment all qualified applicants, including those with criminal histories, in a manner consistent with the requirements of applicable state and local laws, including the City of Los Angeles' Fair Chance Initiative for Hiring Ordinance

Search Firm Representatives Please Read Carefully
Merck & Co., Inc., Rahway, NJ, USA, also known as Merck Sharp & Dohme LLC, Rahway, NJ, USA, does not accept unsolicited assistance from search firms for employment opportunities. All CVs / resumes submitted by search firms to any employee at our company without a valid written search agreement in place for this position will be deemed the sole property of our company. No fee will be paid in the event a candidate is hired by our company as a result of an agency referral where no pre-existing agreement is in place. Where agency agreements are in place, introductions are position specific. Please, no phone calls or emails.

Employee Status:

Regular

Relocation:

Domestic/International

VISA Sponsorship:

Yes

Travel Requirements:

No Travel Required

Flexible Work Arrangements:

Not Applicable

Shift:

1st - Day

Valid Driving License:

No

Hazardous Material(s):

n/a

Job Posting End Date:

07/29/2026

*A job posting is effective until 11:59:59PM on the day BEFOREthe listed job posting end date. Please ensure you apply to a job posting no later than the day BEFORE the job posting end date.