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Knowledge Graph Engineer Jobs in Indiana (NOW HIRING)

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Advisor - Agent Research

Advisor - Agent Research

Eli Lilly and Company

Indianapolis, IN • On-site

Full-time

This job post has expired today. Applications are no longer accepted.


Eli Lilly and Company rating

8.8

Company rating: 8.8 out of 10

Based on 62 frontline employees who took The Breakroom Quiz

11th of 71 rated pharmaceutical


Job description

Job Summary:
Eli Lilly and Company is a global healthcare leader headquartered in Indianapolis, Indiana, dedicated to improving lives through innovative medicines. They are seeking a scientist-engineer hybrid to deploy AI-driven discovery platforms that bridge cutting-edge AI systems and drug discovery workflows.
Responsibilities:
• Partner with chemists and biologists to translate scientific workflows into agentic systems
• Deploy and integrate Agentic AI system into active research programs
• Design and implement cloud-native data pipelines connecting lab instruments, databases, and AI models
• Support model deployment, inference services, and experiment tracking (e.g., MLflow)
• Integrate LLM reasoning with domain tools (RDKit, molecular graph ML, ELN/LIMS APIs, instrument drivers) to build composite agents that plan, simulate, and execute DMTA tasks
• Prototype and iterate rapidly on agent planning strategies, memory systems, and human-in-the-loop patterns
• Represent Frontier AI in the broader AI@Lilly and external AI research community: publish, give talks, review papers, and scout emerging trends.
• Evaluate external vendors, open-source projects, and academic collaborations for strategic fit.
Qualifications:
Required:
• PhD (or MS + 2 yrs / BS + 4 yrs equivalent experience) in Bioinformatics, Cheminformatics, Computer Science, or related discipline with demonstrated wet-lab collaboration or experience.
• Approximately 1-2 years of demonstrated experience of applying AI/ML in scientific discipline such as biology, chemistry, neuroscience, or a related field (industry postdoc counts)
Preferred:
• Proficiency in Python and deep experience with ML/Deep Learning frameworks (e.g., PyTorch, Tensorflow, JAX, HuggingFace).
• Hands-on experience building agentic AI systems (e.g., LangChain, OpenAI Agents SDK)
• Experience designing and shipping end-to-end systems in cloud environments (backend APIs, lightweight frontends, and agentic platforms) - GitHub portfolio a plus
• Strong DevOps/engineering skills: version control (git), containerization (docker, kubernetes), GitOps + CI/CD practices, data systems (Redis, SQL/NoSQL), unit testing, frontend (streamlit, flask)
• Working knowledge of cloud-native (AWS/Azure) pipeline architectures including Nextflow, Argo on Kubernetes
• Familiarity with MLOps, including model versioning, data versioning, and continuous integration/continuous deployment for ML systems.
• Experience with LLM post-training, fine-tuning, or RLHF
• Demonstrable research experience, evidenced by contributions to projects, and ideally through publications in relevant ML/NLP venues (e.g., NeurIPS, ICML, ICLR, ACL, EMNLP).
• Experience mentoring and guiding junior researchers or engineers.
Company:
We're a medicine company turning science into healing to make life better for people around the world. Founded in 1876, the company is headquartered in Indianapolis, USA, with a team of 10001+ employees. The company is currently Late Stage.

What Eli Lilly and Company employees say

Pay

Benefits

Hours and flexibility

Workplace

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Eli Lilly logo

About Eli Lilly

Sourced by ZipRecruiter

Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Indianapolis, IN, US

Year founded

1876