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Instrumentation Software Engineer Jobs (NOW HIRING)

Join the Madison Peptide Therapeutics (MPT) Engineering team as an Instrumentation Software Engineer and help shape the future of cutting-edge peptide array synthesis technology. In this role, you'll ...

Join the Madison Peptide Therapeutics (MPT) Engineering team as an Instrumentation Software Engineer and help shape the future of cutting-edge peptide array synthesis technology. In this role, you'll ...

Join the Madison Peptide Therapeutics (MPT) Engineering team as an Instrumentation Software Engineer and help shape the future of cutting-edge peptide array synthesis technology. In this role, you'll ...

Systems Software Engineer

Santa Clara, CA · On-site

$203.10K - $240.70K/yr

Picarro is seeking a Systems Software Engineer to design, develop, and maintain robust software systems that support scientific instrumentation and data-driven applications. This role requires strong ...

Systems Software Engineer

Santa Clara, CA · On-site

$120K - $130K/yr

Bachelor's Degree Required Position Overview Picarro is seeking a Systems Software Engineer to design, develop, and maintain robust software systems that support scientific instrumentation and data ...

Bachelor's Degree Required Position Overview Picarro is seeking a Systems Software Engineer to design, develop, and maintain robust software systems that support scientific instrumentation and data ...

Systems Software Engineer

Santa Clara, CA · On-site

$120K - $130K/yr

Bachelor's Degree Required Position Overview Picarro is seeking a Systems Software Engineer to design, develop, and maintain robust software systems that support scientific instrumentation and data ...

Senior Instrumentation Engineer About Electra At Electra, we're building the EL9 - a nine-passenger ... Proficiency with instrumentation software and data processing tools (e.g., MATLAB, Python, or ...

Senior Instrumentation Engineer About Electra At Electra, we're building the EL9 - a nine-passenger ... Proficiency with instrumentation software and data processing tools (e.g., MATLAB, Python, or ...

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Instrumentation Software Engineer information

See salary details

$12.5K

$104.9K

$164K

How much do instrumentation software engineer jobs pay per year?

As of Jun 2, 2026, the average yearly pay for instrumentation software engineer in the United States is $104,896.00, according to ZipRecruiter salary data. Most workers in this role earn between $77,500.00 and $131,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as an Instrumentation Software Engineer, and why are they important?

To thrive as an Instrumentation Software Engineer, you need a strong background in computer science, electronics, and instrumentation engineering, usually with a relevant degree. Familiarity with programming languages (such as Python, C++, or LabVIEW), data acquisition systems, and industry-specific protocols is vital, and certifications in software development or instrumentation can be advantageous. Strong problem-solving abilities, attention to detail, and effective communication skills help you excel in multidisciplinary teams and troubleshoot complex systems. These competencies are crucial for developing reliable software solutions that interface with hardware, ensuring precise measurement and control in technical environments.

How does an Instrumentation Software Engineer typically collaborate with hardware and test engineering teams during a project?

Instrumentation Software Engineers work closely with hardware and test engineering teams throughout the project lifecycle. They often participate in cross-functional meetings to understand hardware specifications, define software requirements, and ensure seamless integration between software and physical instruments. Regular communication is essential to troubleshoot issues, validate data acquisition, and optimize system performance. This collaborative approach helps deliver robust, reliable solutions that meet both technical and project goals.

What are Instrumentation Software Engineers?

Instrumentation Software Engineers are professionals who design, develop, and maintain software systems that interface with measurement and control instruments. They write code to collect, process, and analyze data from sensors and equipment, often in fields like manufacturing, scientific research, or industrial automation. Their work ensures that complex instruments operate accurately and reliably, often integrating hardware and software components. They also troubleshoot software issues and optimize systems for performance and reliability.

What is the difference between Instrumentation Software Engineer vs Control Systems Engineer?

AspectInstrumentation Software EngineerControl Systems Engineer
Required CredentialsBachelor's in Software, Electrical, or Mechanical Engineering; knowledge of programming languagesBachelor's in Electrical, Mechanical, or Control Engineering; knowledge of control theory and programming
Work EnvironmentDevelops software for instrumentation devices in manufacturing, testing, or automationDesigns and implements control systems in industrial processes or automation
Industry UsageUsed in manufacturing, automation, and testing industriesCommon in industrial automation, process control, and manufacturing sectors

Both roles involve working with automation and control systems, but Instrumentation Software Engineers focus on developing software for instrumentation devices, while Control Systems Engineers design and optimize entire control processes. The roles often overlap but differ in scope and focus.

More about Instrumentation Software Engineer jobs
What states have the most Instrumentation Software Engineer jobs? States with the most job openings for Instrumentation Software Engineer jobs include:
Infographic showing various Instrumentation Software Engineer job openings in the United States as of May 2026, with employment types broken down into 74% Full Time, 13% Part Time, and 13% Contract. Highlights an 94% Physical, 2% Hybrid, and 4% Remote job distribution, with an average salary of $104,896 per year, or $50.4 per hour.
Software Instrumentation Engineer

Software Instrumentation Engineer

AbbVie

Madison, WI • On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 4 days ago


AbbVie rating

8.8

Company rating: 8.8 out of 10

Based on 95 frontline employees who took The Breakroom Quiz

12th of 71 rated pharmaceutical


Job description

Company Description

About AbbVie

AbbVie's mission is to discover and deliver innovative medicines and solutions that solve serious health issues today and address the medical challenges of tomorrow. We strive to have a remarkable impact on people's lives across several key therapeutic areas including immunology, oncology and neuroscience - and products and services in our Allergan Aesthetics portfolio. For more information about AbbVie, please visit us at www.abbvie.com. Follow @abbvie on LinkedIn, Facebook, Instagram, X and YouTube.

Job Description

Join the Madison Peptide Therapeutics (MPT) Engineering team as an Instrumentation Software Engineer and help shape the future of cutting-edge peptide array synthesis technology. In this role, you'll work alongside talented engineers and scientists to maintain, enhance, and innovate across our fleet of advanced synthesizers in a fast-paced biotech research environment. 

This is an exciting opportunity for a software engineer who enjoys solving complex technical challenges at the intersection of software, hardware, and science. You'll bring your expertise in Windows C# and/or Linux C++ development to design and improve software that interfaces with instrumentation hardware such as sensors, actuators, pumps, motors, cameras, and other electronic devices. Your work will directly support the operation, performance, and data visibility of internally developed laboratory equipment. 

You'll also contribute to workflow software that enables operators to efficiently set up and run instruments, as well as tools that support the quality system. Working in a collaborative Agile team, you'll help deliver high-quality solutions that increase throughput, reduce cost, and improve product quality - making a meaningful impact on both the team and the science. 

Responsibilities: 

  • Design, develop, test, troubleshoot, and maintain Windows and/or Linux software solutions that enhance internally developed peptide array synthesizers. 

  • Apply expertise across software design, programming languages, machine control, data integration, and data analysis/visualization tools. 

  • Perform software testing and validation to ensure quality, reliability, and performance. 

  • Support deployment, configuration, and troubleshooting of software applications in a biotech manufacturing environment. 

  • Follow team development practices, including version control, coding standards, code review, and documentation. 

  • Design and conduct experiments, engineering studies, or models to characterize system behavior and inform design decisions. 

  • Collaborate with cross-functional partners, including scientists, electrical and mechanical engineers, operations managers, and IT staff, to gather requirements and deliver effective solutions. 

  • Communicate effectively with engineering leadership and peers through verbal and written updates. 

  • Adhere to corporate and divisional standards, including code of conduct, safety, GxP compliance, data security, and software development lifecycle requirements. 

Qualifications

Required Qualifications: 

  • Bachelor's Degree or equivalent education with 5 years of experience, or Master's Degree or equivalent education with two years of experience.
  • Proficiency in either: 

  • C#, .NET, and Windows Forms desktop application development in Visual Studio, or 

  • C++ development in a Linux environment. 

  • 1+ years of experience developing software for laboratory, scientific, or medical instrumentation. 

  • Understanding of software architecture and core technical concepts, including: 

  • Service-oriented architecture 

  • Multithreading, semaphores, and mutual exclusion 

  • XML and JSON messaging 

  • Familiarity with software development methodologies and a commitment to Agile practices. 

Preferred Qualifications: 

  • Experience with electronics and embedded systems 

  • Experience interfacing with devices via RS232, RS485, or TCP/IP. 

  • Experience integrating with Tecan, Hamilton, or similar liquid handling robots. 

  • Proficiency in Python or Java. 

  • Experience with AI-assisted software development and/or machine learning. 

  • Experience with Git and GitHub for source code management. 

  • Experience with one or more database types, including relational, graph, or time-series databases. 

Additional Information

Applicable only to applicants applying to a position in any location with pay disclosure requirements under state or local law: 

  • The compensation range described below is the range of possible base pay compensation that the Company believes in good faith it will pay for this roleat  the time of this posting based on the job grade for this position. Individual compensation paid within this range will depend on manyfactors  including  geographic location, and we may ultimately  pay more or less than the posted range. This range may be  modified in the future. 

  • We offer a comprehensive package of benefits including paid time off (vacation, holidays, sick), medical/dental/vision insurance and 401(k) to eligible employees.

  • This job is eligible to  participate in our short-term incentive programs. 

Note: No amount of pay is  considered to be wages or compensation until such amount isearned,  vested,  and determinable. The amount and availability of  any bonus, commission, incentive, benefits, or any other form of compensation and benefits that areallocable to a   particular employee  remains in the Company's sole and absolute discretion unless and until paid and may be  modified at the Company's sole and absolutediscretion,  consistent with applicable law. 

AbbVie is an equal opportunity employer and is committed to operating with integrity, driving innovation, transforming lives and serving our community. Equal Opportunity Employer/Veterans/Disabled. 

US & Puerto Rico only - to learn more, visit https://www.abbvie.com/join-us/equal-employment-opportunity-employer.html

US & Puerto Rico applicants seeking a reasonable accommodation, click here to learn more:

https://www.abbvie.com/join-us/reasonable-accommodations.html


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About AbbVie

Sourced by ZipRecruiter

AbbVie's mission is to discover and deliver innovative medicines that solve serious health issues today and address the medical challenges of tomorrow. We strive to have a remarkable impact on people's lives across several key therapeutic areas: immunology, oncology, neuroscience, eye care, virology, women's health, and gastroenterology, in addition to products and services across its Allergan Aesthetics portfolio. For more information about AbbVie, please visit us at www.abbvie.com. Follow @abbvie on Twitter, Facebook, Instagram, YouTube, and LinkedIn.

Industry

Scientific research and development services

Company size

10,000+ Employees

Headquarters location

North Chicago, IL, US

Year founded

2013