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Gut Microbiome Jobs (NOW HIRING)

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

Specific activities may include: * building and validating community-scale metabolic models of the human gut microbiome using tools such as MICOM; analyzing large-scale metagenomic, metabolomic ...

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

Specific activities may include: * building and validating community-scale metabolic models of the human gut microbiome using tools such as MICOM; * analyzing large-scale metagenomic, metabolomic ...

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How much do gut microbiome jobs pay per year?

As of Aug 29, 2026, the average yearly pay for gut microbiome in the United States is $86,886.00, according to ZipRecruiter salary data. Most workers in this role earn between $71,500.00 and $98,500.00 per year, depending on experience, location, and employer.

What is a gut microbiome?

A Gut Microbiome job involves researching, analyzing, and applying knowledge about the microorganisms living in the human digestive system. Professionals in this field work in academia, healthcare, biotechnology, or nutrition to study how gut bacteria influence health and disease. Roles may include microbiologists, bioinformaticians, dietitians, or clinical researchers. Tasks often involve conducting experiments, analyzing microbiome data, developing probiotics, or advising on gut health interventions. This field is growing as research links the gut microbiome to digestion, immunity, mental health, and chronic diseases.

What are typical daily tasks for a gut microbiome scientist?

As a Gut Microbiome Scientist, your day-to-day responsibilities will often include designing and conducting laboratory experiments, preparing biological samples, and analyzing DNA sequencing data to study microbial populations. You may collaborate with clinicians, data scientists, or nutritionists to interpret results and develop research publications. Regular team meetings to discuss project progress and troubleshooting research challenges are also common. This role provides a balance of hands-on laboratory work and in-depth data analysis, offering opportunities for continuous learning and professional development.

What are the key skills and qualifications needed to thrive in the gut microbiome position, and why are they important?

To thrive as a Gut Microbiome Scientist, you need a strong academic background in microbiology, molecular biology, or a related field, often supported by a PhD or advanced degree. Familiarity with next-generation sequencing (NGS), bioinformatics tools, and laboratory information management systems (LIMS) is typically essential. Critical thinking, strong communication skills, and the ability to collaborate effectively in multidisciplinary teams are important soft skills. These competencies enable you to analyze complex microbial data, contribute to innovative research, and drive impactful discoveries in gastrointestinal health.

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Gut Microbiome jobs near you
Infographic showing various Gut Microbiome job openings in the United States as of August 2026, with employment types broken down into 1% As Needed, 93% Full Time, 5% Part Time, and 1% Contract. Highlights an 81% Physical, 1% Hybrid, and 18% Remote job distribution, with an average salary of $86,886 per year, or $41.8 per hour.

Research Fellow - Gut Microbiome Lab

Rochester, MN

Mayo Clinic
Hospitals • 10K+ employees

7.8

Company rating: 7.8 out of 10

Based on 702 frontline employees who took The Breakroom Quiz

131st of 895 rated healthcare providers

People enjoy working here

Good employer

Recommended by students

Learn more about Mayo Clinicexternal

Full-time

Medical, Dental, Vision, Retirement

Re-posted 20 days ago

Job description

The Gut Microbiome Laboratory, housed within the Enteric Neurosciences Program at Mayo Clinic (Rochester, MN), is seeking a highly motivated, self-driven postdoctoral fellow to join a collaborative and translational research team focused on defining pathophysiological mechanisms underlying gastrointestinal motility disorders.

Our program represents one of the largest and most integrated groups of physicians and scientists studying the enteric nervous system and gastrointestinal physiology, with a long history of paradigm-shifting discoveries that have shaped the field. We are seeking new team members who are excited to contribute to, and extend, this distinguished tradition.

The laboratory is at the forefront of research in human neurogastrointestinal disorders, including irritable bowel syndrome (IBS). We employ an integrated experimental approach that combines physiology, advanced imaging, molecular and cellular biology, and in vivo animal models to interrogate gut-microbe-host interactions. Our work is published in high-impact journals (Gastroenterology, Cell, Cell Host & Microbe, and Science Translational Medicine) and is supported by NIH funding.

We provide extensive resources, mentorship, and a highly collaborative environment to support trainees as they advance to the next stages of their careers. We are committed to fostering a diverse, inclusive, and supportive culture, and we value community, celebrating milestones together, and creating space to recognize both scientific accomplishments and the people behind them.

Why Mayo Clinic

Mayo Clinic is top-ranked in more specialties than any other care provider according to U.S. News & World Report. As we work together to put the needs of the patient first, we are also dedicated to our employees, investing in competitive compensation and comprehensive benefit plans - to take care of you and your family, now and in the future. And with continuing education and advancement opportunities at every turn, you can build a long, successful career with Mayo Clinic.

Benefits Highlights
  • Medical: Multiple plan options.
  • Dental: Delta Dental or reimbursement account for flexible coverage.
  • Vision: Affordable plan with national network.
  • Pre-Tax Savings: HSA and FSAs for eligible expenses.
  • Retirement: Competitive retirement package to secure your future.
Just as our reputation has spread beyond our Minnesota roots, so have our locations. Today, our employees are located at our three major campuses in Phoenix/Scottsdale, Arizona, Jacksonville, Florida, Rochester, Minnesota, and at Mayo Clinic Health System campuses throughout Midwestern communities, and at our international locations. Each Mayo Clinic location is a special place where our employees thrive in both their work and personal lives. Learn more about what each unique Mayo Clinic campus has to offer, and where your best fit is. 

Equal Opportunity

All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, gender identity, sexual orientation, national origin, protected veteran status or disability status. Learn more about the "EOE is the Law".  Mayo Clinic participates in E-Verify and may provide the Social Security Administration and, if necessary, the Department of Homeland Security with information from each new employee's Form I-9 to confirm work authorization.

Qualified candidates should hold a PhD or MD/PhD in physiology, neuroscience, molecular biology, or a related discipline and be within five years of PhD completion. This position is not intended for clinical training and is not open to MD/MBBS candidates seeking clinical roles.

Experience in advanced imaging, single-cell or spatial transcriptomics, and mouse physiological studies is highly desirable, and candidates with expertise in these areas are strongly encouraged to apply.

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About Mayo Clinic

Sourced by ZipRecruiter

Mayo Clinic is the largest integrated, not-for-profit medical group practice in the world. We're building the future, one where the best possible care is available to everyone — and more people can heal at home. Our relentless research turns into earlier diagnoses and new cures. That's how we inspire hope in those who need it most. At Mayo Clinic, experts work together to solve the most challenging unmet needs of patients. Our history of innovation dates back almost 150 years, when brothers Will and Charlie Mayo pioneered an integrated, team-based approach to medicine. Today, that trailblazing spirit drives innovations like Mayo Clinic Platform — which powers new technologies to change how care is delivered to all.

Industry

Hospitals

Company size

10,000+ Employees

Headquarters location

Rochester, MN, US

Year founded

1919

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