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Fermentation Engineer Jobs in Boston, MA (NOW HIRING)

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Fermentation Engineer information

See Boston, MA salary details

$44.5K

$120.2K

$163.5K

How much do fermentation engineer jobs pay per year?

As of Sep 4, 2026, the average yearly pay for fermentation engineer in Boston, MA is $120,218.00, according to ZipRecruiter salary data. Most workers in this role earn between $98,300.00 and $160,200.00 per year, depending on experience, location, and employer.

What does a fermentation engineer do?

A fermentation engineer uses state-of-the-art technologies to formulate new products and refine the processes used in existing ones. Your responsibilities in this career include setting up and testing a process involving a microorganism, such as a yeast or a bacterium, in a fermentor to create new products. You use biotechnology techniques like recombinant DNA technology. Your duties also involve operating sophisticated equipment, such as bioreactors or robots. You can find employment in a wide range of industries, from food production to agriculture to medical science.

What are the key skills and qualifications needed to thrive as a fermentation engineer, and why are they important?

To thrive as a Fermentation Engineer, you need a solid background in bioprocess engineering, microbiology, and chemical engineering, often supported by a relevant degree. Familiarity with fermentation control systems, bioreactor operation, and analytical laboratory tools is typically required. Strong problem-solving, teamwork, and communication skills help you optimize processes and collaborate across multidisciplinary teams. These competencies are vital to ensure efficient, safe, and high-quality fermentation processes in industries like biotech, food, and pharmaceuticals.

What are the most common challenges faced by fermentation engineers in scaling up processes from lab to production?

Fermentation Engineers often encounter challenges when scaling up processes from laboratory to industrial scale, such as maintaining consistent product yields, ensuring robust microbial performance, and managing contamination risks. Differences in equipment, mixing, oxygen transfer, and temperature control can significantly impact the reproducibility and efficiency of fermentation. To address these challenges, engineers work closely with cross-functional teams, including microbiologists, process engineers, and quality assurance, to optimize protocols and implement rigorous monitoring systems throughout scale-up.

What is the difference between Fermentation Engineer vs Microbiologist?

AspectFermentation EngineerMicrobiologist
Required CredentialsBachelor's in Bioengineering, Chemical Engineering, or related field; experience in fermentation processesBachelor's or higher in Microbiology, Biology, or related field; laboratory skills
Work EnvironmentIndustrial labs, manufacturing plants, R&D facilitiesResearch labs, clinical labs, academic institutions
Industry UsageBiotech, pharmaceuticals, food & beverage, biofuel productionHealthcare, research, environmental studies, food safety

Fermentation Engineers focus on designing, optimizing, and scaling fermentation processes in industrial settings, while Microbiologists primarily conduct research and analysis of microorganisms in laboratory environments. Both roles require a strong background in microbiology, but Fermentation Engineers emphasize process engineering and production, whereas Microbiologists focus on scientific study and experimentation.

What job categories do people searching Fermentation Engineer jobs in Boston, MA look for?

The top searched job categories for Fermentation Engineer jobs in Boston, MA are:

Infographic showing various Fermentation Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 92% Full Time, and 8% Contract. Highlights an 84% In-person, 8% Hybrid, and 8% Remote job distribution, with an average salary of $120,218 per year, or $57.8 per hour.

Engineer I, Process Development, Pilot Scale Operations

RXinsider LTD.

Norwood, MA • On-site

$63.20 - $100.90/hr

Other

PTO

Posted 16 days ago


Key responsibilities

  • Support formulation sciences by receiving technology transfer and assisting in process development and scale-up strategies.

  • Operate, maintain, and troubleshoot custom equipment used in pilot-scale production of formulations.

  • Update and author standard operating procedures (SOPs) related to production activities.


Job description

The Role

The Pilot Scale Operations team is seeking a highly skilled and motivated full-time Engineer I to support Formulations (Lipid Nanoparticle and Drug Product) pilot-scale production. Qualified candidates will have relevant academic or industry experience in solution preparation, lipid nanoparticle, sterile fill/finish and/or tangential flow filtration experience, and an understanding of scaling and technology transfer of these unit operations. A successful candidate should have exposure to large and small-scale equipment maintenance and troubleshooting; as well as authoring and updating equipment specific SOPs. This position will require excellent communication and organizational skills, as well as a focus on operational excellence and process optimization. A successful candidate must demonstrate the independent drive and collaborative spirit to operate in a dynamic, fast-paced environment.

Here’s What You’ll Do
  • Be the receiving unit for technology transfer from Moderna’s Process Development teams, focusing on Formulations sciences, including drug formulation/delivery development
  • Assist other development scientists / engineers in defining process development and scale-up strategy, and implementing process control strategies
  • Operate, maintain, and troubleshoot custom equipment used to manufacture Formulations batches
  • Characterize product attributes through collaboration with analytical and technical teams
  • Demonstrate and implement lab best practices
  • Update and write standard operating procedure (SOPs) associated with production as needed
  • Practice safe work habits and adhere to Moderna safety procedures and guidelines
  • Adhere to documented waste handling procedures to respect environmental regulations
Here’s What You’ll Need (Basic Qualifications)
  • Demonstrated success in bioprocess development, technical problem solving, and technology transfer are essential
  • BS/BA (required) or MS in Chemistry, Systems, Biomedical or Chemical Engineering, or closely related field with 0-2 years related experience
  • Hands‑on experience with fermentation, enzymatic reaction, chromatography and/or tangential flow filtration experience is preferred
  • Ability to multi‑task in relentless pursuit of successful outcomes
  • Exceptional written and oral communication
Pay & Benefits

At Moderna, we believe that when you feel your best, you can do your best work. That’s why our benefits and well‑being resources are designed to support you—at work, at home, and everywhere in between.

  • Competitive healthcare, plus voluntary benefit programs to support your unique needs
  • A holistic approach to well‑being, with access to fitness, mindfulness, and mental health support
  • Family planning benefits, including fertility, adoption, and surrogacy support
  • Generous paid time off, including vacation, volunteer days, sabbatical, global recharge days, and a discretionary year‑end shutdown
  • Savings and investments to help you plan for the future
  • Location‑specific perks and extras

The salary range for this role is $63,200.00 - $100,900.00. This is the lowest to highest salary we in good faith believe we would pay for this role at the time of this posting. An individual’s position within the salary range will be based on several factors including, but not limited to, specific competencies, relevant education, qualifications, certifications, experience, skills, performance, and business or organizational needs. The successful candidate may be eligible for an annual discretionary bonus, other incentive compensation, or equity award, subject to company plan eligibility criteria and individual performance.

About Moderna

Since our founding in 2010, we have aspired to build the leading mRNA technology platform, the infrastructure to reimagine how medicines are created and delivered, and a world‑class team. We believe in giving our people a platform to change medicine and an opportunity to change the world. By living our mission, values, and mindsets every day, our people are the driving force behind our scientific progress and our culture. Together, we are creating a culture of belonging and building an organization that cares deeply for our patients, our employees, the environment, and our communities. We are proud to have been recognized as a Science Magazine Top Biopharma Employer, a Fast Company Best Workplace for Innovators, and a Great Place to Work in the U.S.

Our Working Model

As we build our company, we have always believed an in‑person culture is critical to our success. Moderna champions the significant benefits of in‑office collaboration by embracing a 70/30 work model. This 70% in‑office structure helps to foster a culture rich in innovation, teamwork, and direct mentorship. Join us in shaping a world where every interaction is an opportunity to learn, contribute, and make a meaningful impact. Moderna is a smoke‑free, alcohol‑free, and drug‑free work environment.

Equal Opportunities

Moderna is committed to equal employment opportunity and non‑discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry or citizenship, ethnicity, disability, military or protected veteran status, genetic information, sexual orientation, marital or familial status, or any other personal characteristic protected under applicable law. Moderna is a place where everyone can grow.

Moderna is an E‑Verify Employer in the United States. We consider qualified applicants regardless of criminal histories, consistent with legal requirements.

Accommodations

We’re focused on attracting, retaining, developing, and advancing our employees. By cultivating a workplace that values diverse experiences, backgrounds, and ideas, we create an environment where every employee can contribute their best.

Moderna is committed to offering reasonable accommodations to qualified job applicants with disabilities. Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should contact the Accommodations team at leavesandaccommodations@modernatx.com.

Export Control Notice This position may involve access to technology or data that is subject to U.S. export control laws, including the Export Administration Regulations (EAR). As such, employment is contingent upon the applicant’s ability to access export‑controlled information in accordance with U.S. law. Due to the nature of the work and regulatory requirements, only individuals who qualify as U.S. persons (citizens, permanent residents, asylees, or refugees) are eligible for this position. For this role Moderna is unable to sponsor non‑U.S. persons to apply for an export control license.

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