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Epic Application Analyst Jobs in Rochester, MN (NOW HIRING)

This role is ideal for an experienced Application Analyst who enjoys partnering across business, product, architecture, and engineering teams to turn complex needs into clear, actionable solutions.

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Epic Application Analyst information

See Rochester, MN salary details

$35.6K

$85K

$141.3K

How much do epic application analyst jobs pay per year?

As of Sep 9, 2026, the average yearly pay for epic application analyst in Rochester, MN is $84,996.00, according to ZipRecruiter salary data. Most workers in this role earn between $65,600.00 and $95,600.00 per year, depending on experience, location, and employer.

What is an Epic Application Analyst?

An Epic Application Analyst is a healthcare IT professional responsible for configuring, maintaining, and optimizing the Epic electronic health record (EHR) system used by hospitals and clinics. They work closely with clinical staff to understand workflows, implement software upgrades, troubleshoot issues, and ensure data integrity within the Epic system. Analysts typically require Epic certification and technical expertise, as well as strong communication skills to bridge the gap between IT and healthcare operations.

What are the key skills and qualifications needed to thrive as an Epic Application Analyst?

To thrive as an Epic Application Analyst, you need a solid understanding of healthcare workflows, analytical thinking, and a bachelor’s degree in information technology, healthcare, or a related field, often supported by Epic certification. Proficiency with the Epic EHR system, reporting tools, and database management software is crucial for configuring and maintaining clinical applications. Strong problem-solving abilities, effective communication, and attention to detail help analysts collaborate with clinical staff and troubleshoot complex issues. These skills ensure efficient implementation and support of Epic systems, directly impacting healthcare delivery and organizational efficiency.

What are some common challenges faced by Epic Application Analysts when implementing new workflows?

Epic Application Analysts often encounter challenges such as aligning new workflows with existing clinical processes and ensuring thorough communication between IT and healthcare staff. Balancing user needs with system capabilities requires strong problem-solving skills and adaptability, especially when customizing modules for different departments. Additionally, analysts must manage tight project timelines while providing effective training and support to end-users, making strong organizational and interpersonal skills essential for success.

What is the difference between Epic Application Analyst vs Epic Systems Analyst?

AspectEpic Application AnalystEpic Systems Analyst
CertificationsEpic certifications, often specific to modulesEpic certifications, often specific to modules
Work EnvironmentHealthcare organizations using Epic softwareHealthcare organizations using Epic software
Industry UsagePrimarily in healthcare and hospital settingsPrimarily in healthcare and hospital settings
Job FocusImplementing, supporting, and optimizing Epic applicationsImplementing, supporting, and optimizing Epic applications

The terms Epic Application Analyst and Epic Systems Analyst are often used interchangeably, both referring to professionals who support and optimize Epic healthcare software. The main difference lies in terminology preference; both roles require similar certifications, work in healthcare settings, and focus on Epic application support and implementation.

Can I work remotely for Epic Application Analyst?

Epic Application Analysts can often work remotely, depending on the employer and project requirements. Many organizations allow remote work for this role, especially if the analyst has strong technical skills and access to necessary tools like remote desktop software and secure networks.

What are popular job titles related to Epic Application Analyst jobs in Rochester, MN?

For Epic Application Analyst jobs in Rochester, MN, the most frequently searched job titles are:

What cities near Rochester, MN are hiring for Epic Application Analyst jobs?

Cities near Rochester, MN with the most Epic Application Analyst job openings:

Infographic showing various Epic Application Analyst job openings in Rochester, MN as of August 2026, with employment types broken down into 74% Full Time, 22% Part Time, and 4% Contract. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $84,996 per year, or $40.9 per hour.

Lead-IT Application Analyst - EPIC SER Masterfile Team - Hybrid

Rochester, MN • On-site

Mayo Clinic
Hospitals • 10K+ employees

Full-time

Medical, Dental, Vision, Retirement

Re-posted 4 days ago


Mayo Clinic rating

7.8

Company rating: 7.8 out of 10

Based on 707 frontline employees who took The Breakroom Quiz

137th of 898 rated healthcare providers


Job description


The SER Masterfile Team is part of the EHR Technology Testing and Master Files Unit and is responsible for the integrity, maintenance, and governance of Epic Provider (SER) records that support clinical, operational, and revenue cycle workflows across Mayo Clinic. The team serves as a critical partner to Human Resources, Credentialing, Provider Enrollment, Education Services, Compliance, Master Data Management (MDM), and numerous Epic application teams to ensure accurate provider data throughout the provider lifecycle.
The Lead IT Application Analyst serves as the operational and technical leader for the SER Masterfile Team, providing day-to-day leadership, strategic direction, and oversight of provider master file processes and related technologies. This role balances people leadership, stakeholder engagement, operational excellence, and technical expertise while helping shape the future state of provider data management. The lead partners closely with team members, application architects, operational stakeholders, and technology leaders to drive data quality improvements, optimize workflows, develop team capabilities, and ensure reliable support of systems and integrations that depend on provider information.
Success in this role requires the ability to build strong relationships across organizational boundaries, lead complex initiatives involving multiple stakeholders, develop and mentor team members, facilitate consensus among diverse groups, and identify opportunities to improve operational efficiency through standardization, automation, and governance. The ideal candidate combines strong leadership and communication skills with a passion for delivering high-quality data and services that support patient care, provider onboarding, compliance, scheduling, billing, and other critical healthcare operations.
Serves a lead role in the support of software programs or modules across multiple clinical and/or business functions. Directly oversees the activities of those assigned to the development and maintenance of software-based systems in the supported areas. Understands the business environment and the impact IT has on the business environment. Provides analysis and support for installed systems, as well as system implementation and integration projects, which require systems analysis, design, build, testing and implementation for specific modules or applications.
Functions as a liaison between clinical, business, and technical areas during the planning process and provides oversight throughout the project cycle. Fosters and creates partnerships with the clinical and business area to develop a solid knowledge base of a business work area. Research requests to determine scope, size and impact. Validates requirement information with the stakeholders to ensure completeness. Validates the developed solution to ensure it satisfies the stated requirements.
Maintains in-depth knowledge of existing systems and certification in the vended application. Able to design, develop or modify programs, algorithms or rules using vendor command language or similar technology tool. Assures work of others in this area. Is able to manage mid- to large-sized operational projects independently, and delegates responsibilities and directs team members in these activities. Coordinates implementation efforts and provides assistance in implementing proposals across multiple organizational boundaries.
Monitors industry features and standards in order to provide input to both IT and Mayo Clinic strategy. May serve as liaison for industry partnerships or as a Mayo Clinic representative in national industry events. Develops proposals and business plans that ensure quality IT solutions which adhere to industry and Mayo Clinic architecture.
Creates test plans and evaluates current plans for improvement. Provides training and mentoring to those in business analyst or related roles. Assists managers with input for staffing levels, development of staff, and other operational planning.
May be required to provide 24/7 on-call support.
This is a hybrid position and must be located within 100 miles of a Mayo Clinic campus for occasional on-site expectations based on business needs.
Qualifications
Master's degree with 6 years' experience including 3 years of demonstrated leadership experience OR bachelor's degree with 8 years' experience including 3 years of demonstrated leadership experience OR associate's degree and 10 years' experience including 3 years demonstrated leadership experience. Vendor application certification may be required.
Preferred Qualification: EPIC Certification
During the selection process you may participate in an OnDemand (pre-recorded) interview that you can complete at your convenience. During the OnDemand interview, a question will appear on your screen, and you will have time to consider each question before responding. You will have the opportunity to re-record your answer to each question - Mayo Clinic will only see the final recording. The complete interview will be reviewed by a Mayo Clinic staff member, and you will be notified of next steps.
This vacancy is not eligible for sponsorship/we will not sponsor or transfer visas for this position. Mayo Clinic DOES NOT participate in the F-1 STEM OPT extension program.
About Us
Why Mayo Clinic
Mayo Clinic is top-ranked in more specialties than any other care provider according to U.S. News & World Report. As we work together to put the needs of the patient first, we are also dedicated to our employees, investing in competitive compensation and comprehensive benefit plans - to take care of you and your family, now and in the future. And with continuing education and advancement opportunities at every turn, you can build a long, successful career with Mayo Clinic.
Benefits Highlights
  • Medical: Multiple plan options.
  • Dental: Delta Dental or reimbursement account for flexible coverage.
  • Vision: Affordable plan with national network.
  • Pre-Tax Savings: HSA and FSAs for eligible expenses.
  • Retirement: Competitive retirement package to secure your future.

About the Team
Just as our reputation has spread beyond our Minnesota roots, so have our locations. Today, our employees are located at our three major campuses in Phoenix/Scottsdale, Arizona, Jacksonville, Florida, Rochester, Minnesota, and at Mayo Clinic Health System campuses throughout Midwestern communities, and at our international locations. Each Mayo Clinic location is a special place where our employees thrive in both their work and personal lives. Learn more about what each unique Mayo Clinic campus has to offer, and where your best fit is.
Equal Opportunity
All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, gender identity, sexual orientation, national origin, protected veteran status or disability status. Learn more about the "EOE is the Law". Mayo Clinic participates in E-Verify and may provide the Social Security Administration and, if necessary, the Department of Homeland Security with information from each new employee's Form I-9 to confirm work authorization.

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About Mayo Clinic

Sourced by ZipRecruiter

Mayo Clinic is the largest integrated, not-for-profit medical group practice in the world. We're building the future, one where the best possible care is available to everyone — and more people can heal at home. Our relentless research turns into earlier diagnoses and new cures. That's how we inspire hope in those who need it most. At Mayo Clinic, experts work together to solve the most challenging unmet needs of patients. Our history of innovation dates back almost 150 years, when brothers Will and Charlie Mayo pioneered an integrated, team-based approach to medicine. Today, that trailblazing spirit drives innovations like Mayo Clinic Platform — which powers new technologies to change how care is delivered to all.

Industry

Hospitals

Company size

10,000+ Employees

Headquarters location

Rochester, MN, US

Year founded

1919