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Connectomics Jobs (NOW HIRING)

Princeton University

Imaging Specialist

Princeton, NJ · On-site

$110K - $140K/yr

The Institute is a key performer in the NIH BRAIN CONNECTS program, which aims to scale connectomics up to the whole mouse brain. This is a one-year term position with the possibility of extension ...

Princeton University

Imaging Specialist

Princeton, NJ · On-site

$110K - $140K/yr

The Institute is a key performer in the NIH BRAIN CONNECTS program, which aims to scale connectomics up to the whole mouse brain. This is a one-year term position with the possibility of extension ...

Princeton University

Imaging Specialist

Princeton, NJ

$110K - $140K/yr

The Institute is a key performer in the NIH BRAIN CONNECTS program, which aims to scale connectomics up to the whole mouse brain. This is a one-year term position with the possibility of extension ...

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Connectomics information

What is the difference between Connectomics vs Neuroimaging Technician?

AspectConnectomicsNeuroimaging Technician
Required CredentialsNeuroanatomy, neuroscience, advanced imaging techniquesRadiologic technology, certification in neuroimaging
Work EnvironmentResearch labs, neuroscience institutesHospitals, imaging centers
Industry UsageAcademic research, neuroscience projectsMedical diagnostics, patient imaging

Connectomics focuses on mapping neural connections in the brain using advanced imaging and data analysis, often within research settings. Neuroimaging Technicians operate imaging equipment like MRI or CT scanners to produce brain images for clinical or research purposes. While both roles involve brain imaging, connectomics emphasizes neural network mapping, whereas neuroimaging technicians focus on image acquisition and processing for diagnosis or research.

What are some common challenges faced by professionals working in connectomics research, and how can they be addressed?

Professionals in connectomics often encounter challenges such as handling massive datasets, integrating multidisciplinary knowledge, and managing the complexity of high-resolution brain imaging. Collaborating closely with computational scientists, neuroscientists, and data engineers is crucial for overcoming technical and analytical hurdles. Staying current with advancements in imaging technologies and data analysis tools, as well as participating in collaborative research teams, can help address these challenges and foster growth in the role.

What are the key skills and qualifications needed to thrive as a connectomics researcher?

To thrive as a Connectomics Researcher, you need a background in neuroscience, computational biology, and data analysis, often supported by an advanced degree in neuroscience or a related field. Familiarity with imaging technologies (such as MRI, electron microscopy), programming languages (like Python or MATLAB), and data visualization tools is typically required. Strong analytical thinking, attention to detail, and collaborative skills help drive progress in this multidisciplinary field. These competencies are essential for accurately mapping neural connections and advancing our understanding of brain structure and function.

What is connectomics?

Connectomics is the scientific study of the brain's wiring diagram, mapping the complex network of neural connections within the nervous system. Researchers in this field use advanced imaging technologies and computational methods to create detailed maps, or 'connectomes,' that show how neurons and brain regions are interconnected. Understanding these connections helps scientists uncover how the brain processes information, supports behavior, and is affected by diseases. Connectomics is a multidisciplinary field, involving neuroscience, computer science, and engineering, and it plays a crucial role in advancing our knowledge of brain function and disorders.
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Infographic showing various Connectomics job openings in the United States as of August 2026, with employment types broken down into 100% Full Time. Highlights an 94% In-person, and 6% Remote job distribution.

Scientist I - Barcoded Connectomics

Allen Institute

Seattle, WA • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 2 days ago

Job description

Scientist I - Barcoded Connectomics
The Allen Institute accelerates science for a healthier world through large-scale research designed to answer some of the most complex questions in biology. Our multi-disciplinary teams generate foundational knowledge, tools, and data to understand how our brain, cells, and immune system work. We share our work openly so others can build on it, move faster, and ask bigger questions. We drive discovery forward and create new possibilities for improving human health.
The goal of the Brain Science accelerator is to produce three interlocking resources: cell type atlases that catalog every kind of brain cell across ages and species, connectomes that chart the brain's intricate wiring, and a knowledge platform that knits it all together with powerful analysis tools. Every dataset is freely shared, so discoveries made here fuel discoveries everywhere.
We are seeking a Scientist I to join the Barcoded Connectomics team. The Barcoded Connectomics team is broadly interested in understanding the wiring logic of long-range connectivity in the brain. Led by Xiaoyin Chen, who developed BARseq, the team is developing in situ sequencing and barcoded connectomics techniques to reveal the relationship between cell types, gene expression, and projections during development and across species.
The candidate will focus on designing and performing high-throughput transcriptomics and connectomics experiments and analyzing large-scale datasets to reveal principles in brain wiring. In addition to working within the Barcoded Connectomics team, the candidate will benefit from interaction with other teams at the Allen Institute with complementary expertise in sequencing, transcriptomics, and neuroanatomy. We welcome candidates from diverse scientific backgrounds, who may bring their own questions and expertise into the field. Candidates are encouraged to include an optional short research proposal as part of the cover letter describing question(s) they are interested in working on and why the Allen Institute is a good fit for such work.
At the Allen Institute, we believe that science is for everyone - and should be open to everyone. We are dedicated to combating biases and reducing barriers to STEM careers more broadly.
We also believe that science is better when it includes different perspectives and voices. We strive to make the Allen Institute a place where everyone feels like they belong and are empowered to do their best work in a supportive environment.
We are an equal-opportunity employer and strongly encourage people from all backgrounds to apply for our open positions.
Essential Functions
  • Lead projects that focus on understanding wiring rules of the brain using high-throughput techniques
  • Design and analyze high-throughput barcoded connectomics and transcriptomics experiments
  • Coordinate with other teams to acquire data
  • Maintain and improve software packages for data production and processing
  • Monitor and manage data acquisition, storage and deposition
  • Publish and present findings in peer-reviewed journals and scientific conferences
  • Execute collaborative projects within the team, across teams, and/or with external collaborators

*Note: Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions. This description reflects management's assignment of essential functions; it does not proscribe or restrict the tasks that may be assigned.*
Required Education and Experience
  • Ph.D. or equivalent degrees in STEM (i.e. Neuroscience, Biology, Computer science, Mathematics, or related field); or equivalent combination of degree and experience
  • Experience in MATLAB and/or python
  • Experience with lab-based research, experimental methods and troubleshooting

Preferred Education and Experience
  • Experience in molecular biology techniques and tissue culture lab
  • 5 years or more experience with MATLAB and/or python
  • 5 years or more experience in Linux shell scripting and/or micromanager
  • 5 years or more experience with fluorescent microscopy and confocal microscopy

Work Environment
  • Laboratory atmosphere - possible exposure to laser, chemical, biological or other hazardous substance
  • This may include wearing personnel protective equipment (PPE)
  • Exposure to BioSafety Level 2 materials, such as recombinant viruses
  • Potential exposure to and handling of live and fixed NHP tissues and mouse tissues
  • Potential exposure risk for bloodborne pathogens, e.g. Simian B virus

Position Type/Expected Hours of Work
  • Occasional evening and weekend hours required
  • This role is currently working onsite and is expected to work onsite for the majority of working hours. The primary work location for this role is 615 Westlake Ave N., with the flexibility to work remotely on a limited basis.

Travel
  • Occasional travel to partner sites for compliance oversight required
  • Attendance and participation in national and international conferences required

Additional Eligibility Qualifications
  • All employees who work with live animals must complete an Occupational Health medical history form and/or consultation with an Occupational Health Provider and receive clearance to work with animals. Depending on your health history and job responsibilities, an annual respiratory health screening and clearance to use a respirator may also be required

Additional Comments
  • **Please note, this opportunity offers relocation assistance**
  • **Please note, this opportunity may offer work visa sponsorship**

Annualized Salary Range
$86,150 - $106,650 *
* Final salary depends on the required education for the role, experience, level of skills relevant to the role, and work location, where applicable.
Benefits
  • Employees (and their families) are eligible to enroll in benefits per eligibility rules outlined in the Allen Institute's Benefits Guide. These benefits include medical, dental, vision, and basic life insurance. Employees are also eligible to enroll in the Allen Institute's 401k plan. Paid time off is also available as outlined in the Allen Institutes Benefits Guide. Details on the Allen Institute's benefits offering are located at the following link to the Benefits Guide: https://alleninstitute.org/careers/benefits.

It is the policy of the Allen Institute to provide equal employment opportunity (EEO) to all persons regardless of age, color, national origin, citizenship status, physical or mental disability, race, religion, creed, gender, sex, sexual orientation, gender identity and/or expression, genetic information, marital status, status with regard to public assistance, veteran status, or any other characteristic protected by federal, state or local law. In addition, the Allen Institute will provide reasonable accommodations for qualified individuals with disabilities.

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