Commission Bioinformatics Software Engineer Jobs in Illinois

Company Description

Welcome to Our World We've been leading the charge in the affiliate industry from day one-establishing performance marketing and paving the way for future innovations. We're known for maintaining one of the largest, most reliable partnership platforms with impeccable, personalized service.  Founded in Santa Barbara, California in 1998, CJ (formerly Commission Junction) stands as the most trusted name in performance marketing. We specialize in building partnerships between top brands and reputable publishers to drive revenue and business growth. CJ's industry-leading solutions make us the platform of choice for over 3,800 global brands across sectors like retail, travel, finance, technology, and home services. As part of Publicis Groupe, our savvy data capabilities, cutting-edge tech, and strategic expertise facilitate genuine connections, allowing brands to reach consumers wherever they are.  A Quick Peek at Affiliate Marketing Think back to your last online purchase. Did an influencer tip you off about a great product and offer a discount? Or perhaps you relied on a trusted review site to make your decision? Whatever path you took, affiliate publishers likely played a role by influencing, informing, or helping you find the best deal. CJ connects brands with these publishers, creating valuable resources for shoppers like you. 

Job Description

You must be work authorized in the United States without the need for employer sponsorship.

This is a hybrid role requiring 3 days a week in office.

About CJ Engineering 

Are we a good match for you? 

At CJ, we are passionate about software engineering. We build exciting software, with quality and maintainability in mind. We believe in common sense, simplicity, and efficiency. We practice critical thinking, challenge each other no matter the title, and believe in the wisdom of the team. 

That makes us Engineers and not just developers. Here are some of the principles that set CJ engineers apart.  

• Engineering autonomy: Here, business decisions are made by business people, and technical decisions are made by technical people. 

• Full stack: Expect to be involved and to gain competence in every aspect of software engineering, from frontend, to database, to requirements analysis, to testing, to helping choose technologies. 

• Clean, Maintainable code: Code is read more often than it is written, so we put in the effort to write it well in the first place. 

• Pairing: The highest quality code is produced by close collaboration, so we pair by default. 

• TDD: Quality is baked into our process through Test Driven Development 

• Ownership: Engineers own the full lifecycle of what they build-from design and implementation to deployment, monitoring, production support, and on-call rotations. If we build it, we support it. 

• Operational Excellence: We embrace Infrastructure as Code, CI/CD, automation, and observability to build reliable systems and deliver software safely, efficiently, and at scale. 

• We believe in Agile values, and incremental development. We constantly experiment, retrospect, and adjust. 

• We are committed to finding out how AI can amplify our productivity. We view AI as a force multiplier, not a replacement for good engineering. 

If this sounds exciting, we want to hear from you! 

As a Software Engineer 3 on the Engineering Experience (EngExp) platform team, you help run and evolve the platform that powers CJ's production systems across multiple AWS regions. "Platform" here is broad - it is the Kubernetes clusters, but also the observability stack every squad depends on, the CI/CD and artifact infrastructure their builds run through, the AWS networking that connects them, the secrets and access systems that gate them, and the cost visibility that keeps them accountable. EngExp owns all of it. This is not just an infrastructure role - your value is in engineering judgment: how you evaluate systems, detect risk, and make decisions under uncertainty. You'll own meaningful pieces of these systems independently and drive changes from design through production. We want real depth in the systems below, not just familiarity with the tool names. 

Responsibilities 

What systems you will work on:

• Observability & monitoring - Prometheus, Alertmanager, Grafana, and OpenTelemetry across production regions. This is not dashboard-building: you'll own cardinality budgets and recording-rule design, keep a production Prometheus healthy as it outgrows a single shard (federation / sharding / long-term store), and understand Alertmanager HA and the blast radius of alert-routing config. Deep Prometheus and Alertmanager knowledge is a core requirement. 
• Kubernetes & cloud infrastructure - multi-region EKS clusters: upgrades, node group and Karpenter management, controller lifecycle, and add-on / configuration management. Spot failure modes before they happen (subnet IP exhaustion, API server latency, ArgoCD reconciliation lag, Prometheus cardinality, Karpenter consolidation disruption). 
• AWS networking - VPC and subnet design, CIDR management, VPC peering, Route53, security groups, and NAT gateway topology across accounts and regions, plus the 24/7 networking alarms for prod networking between clusters and squad resources. 
• CI/CD & artifact management - GitLab administration (runner fleet, cache, access - not just pipeline authoring), GitOps delivery through ArgoCD, and the Nexus artifact repository including its storage lifecycle as it grows. 
• Access & identity - Vault secrets management, IAM roles and service accounts for apps in clusters, cluster permission management for audit compliance, and AI model access management. Turn recurring access requests into self-service workflows that are hard to misuse. 
• Cost observability - OpenCost, EBS orphan cleanup, cost anomaly investigation, and rightsizing attribution across teams. 

What You'll Do:

• Own and evolve meaningful pieces of the systems above - with a focus on what is happening and why 
• Manage infrastructure-as-code with Terraform across AWS accounts 
• Build and maintain GitLab CI/CD pipelines and GitOps delivery (ArgoCD) 
• Help enforce platform standards: RBAC, admission webhooks, resource limits, LimitRanges 
• Turn recurring requests (ingress, DNS, service accounts) into self-service workflows 
• Respond to and help drive resolution of platform incidents, focused on learning and system improvement 
• Act as a reviewer of infrastructure changes - Terraform, Kubernetes configs, observability config 

Technologies We Use: 

• Kubernetes / EKS (multi-cluster, multi-region), Karpenter, cert-manager, external-dns 
• Prometheus, Alertmanager, Grafana, OpenTelemetry (and long-term storage / sharding for Prometheus) 
• AWS networking (VPC, VPC peering, Transit Gateway, Route53, NAT Gateway, security groups, subnet/CIDR design across accounts and regions) 
• Terraform, AWS (IAM, EKS, S3, EBS) 
• ArgoCD, GitLab CI/CD, Nexus (artifact registry), Docker, container image build pipelines 
• Vault, OpenCost 
• Kubernetes controllers/operators (reconciliation patterns, restart safety) - Go experience is a plus, not required

 Qualifications

What We Look For:

• 3+ years of experience in software or infrastructure engineering 
• Bachelor's degree or equivalent experience 
• Hands-on production experience with Kubernetes and at least one major cloud (AWS preferred) 
• Real operational depth in at least one system we own beyond the cluster - most valuably the observability stack (Prometheus/Alertmanager at scale), but AWS networking, Vault, or artifact/CI infrastructure also count. We are filtering for people who have run these systems, not just used them. 
• Comfortable owning infrastructure-as-code (Terraform) and CI/CD pipelines 
• Can reason about tradeoffs and communicate the pros and cons of multiple approaches 
• Effective communication; thrives in a collaborative, pair-friendly team culture 

Nice to Have:

• AWS networking depth (Transit Gateway, multi-account topology) 
• Prometheus long-term storage / sharding (Thanos, Cortex, Mimir, or equivalent) 
• Kubernetes controllers/operators - Go experience is a plus, not required 
• Policy-as-code (Kyverno / OPA) 

What Success Looks Like:

• You own platform components independently and ship changes that are intentional and low-risk 
• The systems you own are understood deeply enough that we stop making decisions we have to reverse 
• Production issues are understood quickly because of the observability and instincts you bring 
• Engineers can deploy and debug services with less platform intervention over time  

 Additional Information

This is a hybrid role requiring 3 days a week in office.CJ is the leader in Performance Marketing. We take pride in our innovative technology, comprehensive data solutions and our people. We equip our teams with advanced tools, training and career development opportunities all to provide modern solutions, strategies and support to deliver high quality results for our clients. We work in an enthusiastic, collaborative team setting that values outstanding performance.

We're a community of creative and passionate problem solvers who go the distance to tackle the tough questions, think creatively, and drive resourceful growth, for our clients-and ourselves. We foster and embody an inclusive and collaborative culture where diverse perspectives are sought, relationships are valued, and people feel accepted with a sense of belonging in expressing themselves authentically. We pride ourselves in having a workplace environment that values both work and play.

Why Our Workplace Stands Out Apart from offering competitive salaries, 401K matching, wellness programs, and comprehensive medical, dental, and vision coverage, we provide: Flexible time off without the hassle of accrual A generous number of paid holidays Company-sponsored team-building events An Employee Referral Program Annual recognition awards Hybrid work arrangements for optimal work-life balance Parental bonding leave Backup care options for children and elders An employee discount program International SOS program for global support Business Resource Groups, where employees connect over shared interests to cultivate an engaging, inclusive environment

...and those are just a few of our great perks! Come join us and see what makes our company a great place to work.

If you require accommodation or assistance with the application or onboarding process specifically, please contact USMSTACompliance@publicis.com.

All your information will be kept confidential according to EEO guidelines. #LI-DT1

 Compensation Range: USD $88,540.00 - USD $135,632.00/Annually. This is the pay range the Company believes it will pay for this position at the time of this posting. Consistent with applicable law, compensation will be determined based on the skills, qualifications, and experience of the applicant along with the requirements of the position, and the Company reserves the right to modify this pay range at any time. Temporary roles may be eligible to participate in our freelancer/temporary employee medical plan through a third-party benefits administration system once certain criteria have been met. Temporary roles may also qualify for participation in our 401(k) plan after eligibility criteria have been met. For regular roles, the Company will offer medical coverage, dental, vision, disability, 401k, and paid time off. The Company anticipates the application deadline for this job posting will be 9/27/2026.Employment Type: FULL_TIME