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Biotech Software Engineer Jobs in Hagerstown, MD

Qiagen

Bioinformatics Scientific Expert

Frederick, MD

$80K - $110K/yr

Working in a highly collaborative environment, you will partner with scientists, software engineers ... biotechnology, diagnostics, or pharmaceutical environment is considered an advantage. The estimated ...

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Biotech Software Engineer information

See Hagerstown, MD salary details

$63K

$146.3K

$203.7K

How much do biotech software engineer jobs pay per year?

As of Aug 30, 2026, the average yearly pay for biotech software engineer in Hagerstown, MD is $146,257.00, according to ZipRecruiter salary data. Most workers in this role earn between $119,000.00 and $171,500.00 per year, depending on experience, location, and employer.

What is a biotech software engineer?

A Biotech Software Engineer develops software solutions for the biotechnology industry, enabling research, data analysis, and automation in fields like genomics, bioinformatics, and drug discovery. They work with scientists to design algorithms, manage biological data, and create applications that support experiments and workflows. This role requires expertise in programming, cloud computing, and biological sciences to bridge the gap between technology and life sciences.

What does a biotech software engineer do?

As a Biotech Software Engineer, you'll often develop and maintain software tools for analyzing biological data, automate laboratory workflows, or create user-friendly interfaces for scientific researchers. Your daily tasks might include writing code, troubleshooting algorithms, reviewing scientific data, and collaborating closely with biologists, data scientists, and laboratory technicians. Depending on the company, you may be involved in developing cloud-based platforms, integrating new laboratory hardware, or ensuring software compliance with industry regulations. This dynamic and collaborative environment means your work directly impacts ongoing research and helps accelerate scientific discoveries in the biotech sector.

What are the key skills and qualifications needed to thrive as a biotech software engineer?

To thrive as a Biotech Software Engineer, you need a solid background in computer science or software engineering, coupled with an understanding of biology, genetics, or related life sciences. Familiarity with programming languages such as Python or Java, experience using bioinformatics tools (like BLAST or Bioconductor), and, in some settings, knowledge of regulatory standards are highly valuable. Strong problem-solving abilities, effective communication, and the ability to work well in interdisciplinary teams distinguish top performers in this field. These skills are crucial for building reliable software solutions that support scientific discovery and innovation in biotechnology organizations.

What are popular job titles related to Biotech Software Engineer jobs in Hagerstown, MD?

For Biotech Software Engineer jobs in Hagerstown, MD, the most frequently searched job titles are:

What cities near Hagerstown, MD are hiring for Biotech Software Engineer jobs?

Cities near Hagerstown, MD with the most Biotech Software Engineer job openings:

Biotech Software Engineer jobs near you
Infographic showing various Biotech Software Engineer job openings in Hagerstown, MD as of August 2026, with employment types broken down into 84% Full Time, 13% Part Time, and 3% Contract. Highlights an 85% Physical, 4% Hybrid, and 11% Remote job distribution, with an average salary of $146,257 per year, or $70.3 per hour.

Bioinformatics Scientific Expert

Frederick, MD

Qiagen
See more jobs at Qiagenexternal

$80K - $110K/yr

Full-time

Medical, Vision, Life

Posted 4 days ago

Job description

Overview


At QIAGEN, we are driven by a simple but powerful vision: making improvements in life possible.

We're dedicated to revolutionizing science and healthcare for the better. From our entrepreneurial roots to our current global presence, we've grown into a force for positive change. With thousands of employees across six continents, collaboration is our greatest strength. We're always striving to identify talented individuals to join our exceptional teams.
We have played a pivotal role in shaping modern science and healthcare, and we're just getting started. If you're someone who thrives on new challenges, values diversity and wants to make a tangible difference in people's lives, then QIAGEN is the place for you.

At QIAGEN, every day is an opportunity to make a real-life impact.

Join us, grow with us, and together, let's shape the future of biological discovery.

About the opportunity
Join QIAGEN's Bioinformatics team and contribute to the development of innovative genomic technologies that support molecular diagnostics and life science products. In this role, you will combine expertise in next-generation sequencing (NGS), molecular assay design, and computational biology to develop robust bioinformatics solutions that advance scientific discovery and improve healthcare outcomes worldwide. Working in a highly collaborative environment, you will partner with scientists, software engineers, assay developers, and cross-functional teams to transform complex biological data into impactful products and actionable insights.
Your tasks include
  • Develop, optimize, validate, and maintain bioinformatics workflows and pipelines for next-generation sequencing (NGS) data analysis.
  • Analyze large-scale genomic and sequencing datasets to generate scientific insights that support product innovation and development.
  • Design and optimize PCR and digital PCR (dPCR) assays using sequence analysis tools and bioinformatics methodologies.
  • Create computational approaches for primer and probe design, target selection, and assay performance evaluation.
  • Collaborate closely with molecular biologists, assay developers, software engineers, and product development teams throughout the product lifecycle.
  • Evaluate emerging bioinformatics technologies, algorithms, AI/ML approaches, and software tools to improve analytical performance and efficiency.
  • Document methods, validation activities, and scientific findings in accordance with quality standards and communicate results to internal stakeholders.
Your profile
  • Master's degree in Bioinformatics, Computational Biology, Genomics, Computer Science, or a related discipline with 1-3 years of relevant academic or industry experience; PhD preferred.
  • Hands-on experience with NGS data analysis and familiarity with common genomic file formats such as FASTQ, BAM/CRAM, and VCF.
  • Experience with PCR and/or digital PCR (dPCR) assay design, including primer and probe design principles.
  • Strong programming skills in Python, R, or similar scripting languages, with experience working in Linux/Unix environments.
  • Knowledge of machine learning methods applied to biological or genomic data and familiarity with frameworks such as scikit-learn, PyTorch, or TensorFlow.
  • Understanding of molecular biology, genomics, nucleic acid chemistry, and statistical analysis techniques relevant to bioinformatics applications.
  • Experience with Git, software development best practices, and production-quality bioinformatics pipelines; experience in a regulated biotechnology, diagnostics, or pharmaceutical environment is considered an advantage.

The estimated base salary range for this position is $80,000-$110,000. Compensation will be based on the candidate's experience, skills, geographic location, and other job-related factors. In addition to base salary, we offer a total compensation package that includes a bonus plan and generous benefits.

What we offer

  • Bonus/Commission

  • Local benefits

  • Referral Program

  • Volunteer Day

  • Internal Academy (QIALearn)

  • Employee Assistance Program

  • Hybrid work (conditional to your role)

Our people are the heartbeat of everything we do. Passion drives us as we push boundaries to innovate and evolve.We inspire with our leadership and make an impact with our actions.We cultivate a collaborative, supportive environment where each individual and team can flourish. We champion accountability and encourage entrepreneurial thinking.

QIAGEN is committed to creating a diverse environment and is proud to be an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, color, sex, age, national origin, religion, sexual orientation, gender identity, status as a veteran, or disability.

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