ZipRecruiter

Log In

1

Biotech Software Engineer Jobs in New York (NOW HIRING)

Danaher

Software Engineer Internships

Edison, NJ · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Newark, NJ · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Stamford, CT · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Paterson, NJ · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Elizabeth, NJ · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Bronx, NY · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Yonkers, NY · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Manhattan, NY · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Danaher

Software Engineer Internships

Flushing, NY · On-site

About Software Engineering Roles at Danaher Are you passionate about building real-world ... biotechnology. Our global teams work every day to solve the world's most complex challenges by ...

Inductive Bio

Full Stack Software Engineer

New York, NY · On-site

$180K - $240K/yr

We are backed by leading investors at the intersection of technology and biotechnology, and we are advised by world-class drug discovery experts. We are seeking a full-stack software engineer to join ...

Formation Bio

Software Engineer (Open Level)

New York, NY · On-site

$204K - $267K/yr

About the Position We're hiring Software Engineers to help implement what engineering looks like at ... Experience in pharma, biotech, or life sciences. Genuine curiosity about the domain. * You want to ...

Output, Inc

Software Engineer, Agents

New York, NY · On-site

Output is currently in stealth, operated by a team of repeat founders and biotech veterans with ... You will establish and maintain software engineering practices across the team: testing, CI/CD ...

Xforia, Inc.

AI Engineer

Manhattan, NY · On-site +1

$134K - $177K/yr

Role: Senior Software Engineer. Emerging Products (AI/LLM) Location: New York City,NY Client ... software deployment (e.g., containerization, CI/CD). * Experience in the pharmaceutical or biotech ...

next page

Showing results 1-20

All JobsBiotech Software Engineer JobsBiotech Software Engineer Jobs in New York

Biotech Software Engineer information

See New York salary details

$69.5K

$161.4K

$224.8K

How much do biotech software engineer jobs pay per year?

As of Jul 26, 2026, the average yearly pay for biotech software engineer in New York is $161,396.00, according to ZipRecruiter salary data. Most workers in this role earn between $131,300.00 and $189,300.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive in the Biotech Software Engineer position, and why are they important?

To thrive as a Biotech Software Engineer, you need a solid background in computer science or software engineering, coupled with an understanding of biology, genetics, or related life sciences. Familiarity with programming languages such as Python or Java, experience using bioinformatics tools (like BLAST or Bioconductor), and, in some settings, knowledge of regulatory standards are highly valuable. Strong problem-solving abilities, effective communication, and the ability to work well in interdisciplinary teams distinguish top performers in this field. These skills are crucial for building reliable software solutions that support scientific discovery and innovation in biotechnology organizations.

What engineers make $500,000?

Senior biotech software engineers with extensive experience, specialized skills in data analysis, machine learning, or bioinformatics, and often working in leadership roles or at large biotech firms can earn $500,000 or more annually. High compensation may also include bonuses, stock options, or profit sharing, especially in competitive or rapidly growing companies.

What are some typical projects or daily tasks for a Biotech Software Engineer?

As a Biotech Software Engineer, you'll often develop and maintain software tools for analyzing biological data, automate laboratory workflows, or create user-friendly interfaces for scientific researchers. Your daily tasks might include writing code, troubleshooting algorithms, reviewing scientific data, and collaborating closely with biologists, data scientists, and laboratory technicians. Depending on the company, you may be involved in developing cloud-based platforms, integrating new laboratory hardware, or ensuring software compliance with industry regulations. This dynamic and collaborative environment means your work directly impacts ongoing research and helps accelerate scientific discoveries in the biotech sector.

Will AI replace biotechnologists?

Biotech software engineers and biotechnologists perform complementary roles; AI can automate certain tasks like data analysis and modeling but is unlikely to fully replace the expertise, creativity, and decision-making skills required in biotechnology. Human oversight remains essential for experimental design, interpretation, and ethical considerations in the field.

What is a biotech software engineer?

A biotech software engineer develops software applications and tools to support biological research, healthcare, and pharmaceutical development. They often work with data analysis, automation, and laboratory systems, requiring skills in programming, bioinformatics, and understanding of biological processes.

What is a Biotech Software Engineer job?

A Biotech Software Engineer develops software solutions for the biotechnology industry, enabling research, data analysis, and automation in fields like genomics, bioinformatics, and drug discovery. They work with scientists to design algorithms, manage biological data, and create applications that support experiments and workflows. This role requires expertise in programming, cloud computing, and biological sciences to bridge the gap between technology and life sciences.

Can you make $500,000 as a software engineer?

Biotech software engineers typically earn between $80,000 and $150,000 annually, with higher salaries possible for senior roles or those with specialized skills like data analysis or machine learning. Reaching a $500,000 salary usually requires extensive experience, leadership positions, or working in high-paying industries or companies. Such compensation levels are uncommon for standard biotech software engineering roles.
What are the most commonly searched types of Biotech Software Engineer jobs in New York? The most popular types of Biotech Software Engineer jobs in New York are:
What are popular job titles related to Biotech Software Engineer jobs in New York? For Biotech Software Engineer jobs in New York, the most frequently searched job titles are:
What job categories do people searching Biotech Software Engineer jobs in New York look for? The top searched job categories for Biotech Software Engineer jobs in New York are:
What cities in New York are hiring for Biotech Software Engineer jobs? Cities in New York with the most Biotech Software Engineer job openings:
Biotech Software Engineer jobs near you
Infographic showing various Biotech Software Engineer job openings in New York as of July 2026, with employment types broken down into 3% Locum Tenens, 2% As Needed, 85% Full Time, 4% Part Time, 1% Temporary, and 5% Contract. Highlights an 84% Physical, 3% Hybrid, and 13% Remote job distribution, with an average salary of $161,396 per year, or $77.6 per hour.
Software Engineer, Implementations

Software Engineer, Implementations

Uncountable

New York, NY • On-site, Remote

$90K - $110K/yr

Full-time

Medical, Dental, Retirement

Posted 23 days ago

Job description

Thank you for your interest in Uncountable Implementations Engineering!
About Uncountable
Science moves slowly - not because researchers aren't brilliant, but because their tools haven't kept up. Uncountable is changing that. We build a unified R&D platform used by the world's leading chemists, material scientists, and biologists to dramatically accelerate how new products are discovered, developed, and brought to market.
Founded by engineers from MIT and Stanford, and trusted by enterprise R&D organizations across chemicals, pharmaceuticals, advanced materials, and food & beverage, Uncountable is on a mission to accelerate industrial R&D by an order of magnitude. Implementations Engineering is a small, high-velocity team - and every person here makes a real difference.
The Role
We're looking for a scientifically-minded software engineer to join our Implementations Engineering team. This is a rare hybrid role that sits at the intersection of software development and scientific domain expertise, where you'll spend your time building real, production-grade software that connects Uncountable's platform to the actual instruments, systems, and workflows used in R&D labs around the world.
When a biotechnology company wants their HPLC instrument to automatically push results into Uncountable, or a materials company needs their legacy LIMS data migrated and mapped into a structured format, you're the engineer who makes that happen. You'll write Python scripts, design data pipelines, connect to APIs, and work directly with customers to understand their data environments and deliver solutions that save their scientists hours every week.
This isn't a support role - it's an engineering role with a domain twist. You'll have real ownership over your work, interact directly with customers, and see the direct impact of what you build.
What You'll Do
  • Build data integrations that ingest outputs from lab instruments (spectrometers, rheometers, HPLCs, and more) into Uncountable's platform
  • Design and implement automated data transfer pipelines that connect customer systems - ELNs, LIMS, spreadsheets, databases - to Uncountable
  • Write Python scripts and tooling to parse, validate, and transform scientific data files in a wide variety of formats
  • Work directly with customer technical teams to understand their data environments, map their schemas, and deliver clean, well-documented integrations
  • Collaborate with Uncountable's core engineering team to identify integration patterns that can be built into the product itself
  • Debug and maintain existing integrations as customer needs evolve and data sources change
  • Contribute to internal tooling and shared libraries that make future integrations faster and more reliable

Requirements
  • Programming experience: Coursework or professional experience equivalent to 4 university-level CS courses; comfort writing Python or another scripting language to process data files
  • Scientific background: Meaningful knowledge of chemistry, materials science, biology, or a related life/physical science - enough to understand what a researcher means when they talk about their data
  • Genuine curiosity about software engineering and how technology can transform scientific workflows
  • Problem-solving mindset: Comfortable diving into unfamiliar file formats, APIs, and data structures to figure things out

Preferred Qualifications
  • B.S. in Computer Science, Chemical Engineering, Materials Science, Chemistry, Bioengineering, or a related field
  • Experience working with APIs (REST), SQL databases, or Excel/CSV data pipelines
  • Exposure to lab environments, scientific instrumentation, or research data workflows
  • Prior experience at a startup or in a fast-paced technical environment

Why This Role Is Exciting
  • Real-world impact: You'll directly accelerate the work of PhD scientists at major companies - what you build makes their research faster and more reproducible
  • Domain depth: You'll develop rare expertise at the intersection of software engineering and industrial R&D - a skillset that opens doors across biotech, materials, chemicals, and beyond
  • Customer exposure: Unlike most engineering roles, you'll interact directly with the people using your software, getting fast feedback and building relationships with R&D leaders at world-class organizations
  • Ownership from day one: At a company of our size, you won't be a cog. You'll scope, build, and ship your own integrations, and your ideas will shape how we approach future work
  • Engineering-first culture: We're a team that takes pride in writing high-quality code quickly. You'll learn from strong engineers and be develop quickly

Benefits
  • Competitive salary and equity
  • Health and dental insurance
  • 401(k) with employer contribution (US locations)
  • Direct mentorship and fast career growth on a small, high-caliber team

Ready to apply? Learn more about interviewing at Uncountable →

Apply