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Bioinformatics Java Jobs (NOW HIRING)

Guidehouse

Bioinformatics Scientist

Durham, NC · On-site

Proficiency in programming languages and tools such as R, Python, MATLAB, Java, and Unix/Linux ... Ph.D. in Bioinformatics, Biostatistics, Computational Biology, or a related biological or life ...

Guidehouse

Bioinformatics Scientist

Durham, NC

Evaluate and implement new bioinformatics tools, statistical methods, and computational approaches ... PERL, Java, Shell, Bash, Seurat /Scanpy,Linux,Unix,Bioconductor,Cloud computing,High ...

University of Rochester

$77K - $116K/yr

The Department of Surgery seeks a Bioinformatics Analyst II to provide biostatistical and ... Competency with Python, JAVA, Perl, C++, and Cloud computing PREFERRED * Expert knowledge of ...

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How much do bioinformatics java jobs pay per hour?

As of Aug 8, 2026, the average hourly pay for bioinformatics java in the United States is $56.70, according to ZipRecruiter salary data. Most workers in this role earn between $49.04 and $63.46 per hour, depending on experience, location, and employer.

What is a bioinformatics Java?

A Bioinformatics Java job involves developing software solutions for analyzing biological data, such as DNA sequences, protein structures, or genomic information, using Java programming. Professionals in this role work with bioinformatics algorithms, databases, and tools to support research in genomics, drug discovery, and biotechnology. They often collaborate with biologists, data scientists, and researchers to create efficient computational solutions for complex biological problems. Strong skills in Java, data structures, and bioinformatics tools like Bioconductor or Apache Hadoop are typically required.

What does a bioinformatics Java do?

As a Bioinformatics Java developer, your daily tasks often include designing, developing, and maintaining Java-based software applications that process and analyze biological data. You'll work closely with interdisciplinary teams of biologists, data scientists, and other software engineers to understand requirements and translate them into functional solutions. Additional responsibilities may involve optimizing algorithms for large-scale genomic data, integrating data from public repositories, or developing tools for data visualization. Active participation in code reviews, documenting software, and troubleshooting technical issues are also routine parts of the role. This collaborative and diverse work environment offers opportunities to contribute directly to important advancements in scientific research.

What are the key skills and qualifications needed to thrive in a bioinformatics Java position?

To thrive as a Bioinformatics Java professional, you need strong programming skills in Java, a solid understanding of bioinformatics concepts, and typically a degree in bioinformatics, computer science, or a related field. Experience with bioinformatics tools, databases (such as BLAST, GenBank, or Ensembl), and workflow management systems is highly valued, and industry certifications can be advantageous. Strong problem-solving abilities, attention to detail, and effective collaboration and communication skills distinguish top performers. These qualifications enable professionals to develop robust software solutions that address complex biological data challenges and facilitate research breakthroughs.

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Infographic showing various Bioinformatics Java job openings in the United States as of August 2026, with employment types broken down into 1% Internship, 80% Full Time, 3% Part Time, and 16% Contract. Highlights an 84% Physical, 4% Hybrid, and 12% Remote job distribution, with an average salary of $117,931 per year, or $56.7 per hour.

Bioinformatics Software Engineer

Artech Information System LLC

South San Francisco, CA

Full-time

Re-posted 19 days ago

Job description

Company Description

Artech is the 10th Largest IT Staffing Company in the US, according to Staffing Industry Analysts' 2012 annual report. Artech provides technical expertise to fill gaps in clients' immediate skill-sets availability, deliver emerging technology skill-sets, refresh existing skill base, allow for flexibility in project planning and execution phases, and provide budgeting/financial flexibility by offering contingent labor as a variable cost.

Job Description

Job Title: Bioinformatics Software Engineer

Location: South San Francisco, CA

Duration: 11+ Months
Position Type: Contract

Duties:

  • We have a full-time temporary contractor opening (11 months) for an experienced software engineer in the Ion AmpliSeq Designer team.
  • The individual will focus on developing a brand new API web-service to enable third-party integrations with the AmpliSeq Designer software.
  • The individual will design and implement the core service and related authentication aspects, notifications, versioning, as well as work on deployment & scaling in a cloud-hosted environment.
  • The successful candidate will be part of an innovative multi-disciplinary team developing applications for Ion Torrent DNA sequencing.
  • As part of this team, they will be expected to work in a fast paced, complex setting to hard deliverables in a collaborative environment.
  • Critical thinking, determination to succeed, the willingness and courage to push the boundaries on the possible and the drive to deliver are key attributes.

Primary responsibilities include:

  • Design, develop, and test API web-services to enable third party integrations of AmpliSeq Designer functionality.
  • Integrate such API with existing backend data analysis pipelines and databases.
  • Document and maintain API specifications, coordinate with clients of the API.
  • Handle authentication, status notifications, versioning and related aspects.
  • Develop automation tools and scripts to aid testing of the API using real and mock data.
  • Collaborate with a team of software developers and bioinformatics scientists to deliver software features in release cycles (in an agile development process).

Requirements:

  • Experience with multiple complete product development life cycles from concept to development and product testing and final release.
  • Excellent communication and organization skills.
  • Proven expertise with Java and web-service frameworks like Play, DropWizard, etc.
  • Experience with designing APIs, building REST-ful webservices, working with SQL databases.
  • Proven expertise with Perl, Python, or UNIX scripting.
  • Bioinformatics background knowledge (genomics, molecular biology) and skills (NGS, assay design, tools, file-formats etc.) are a strong plus.
  • Prefer experience with cloud computing, AWS, docker, scaling.
Additional Information

Vishnu Kumar

Technical Recruiter 

Artech Information Systems LLC 

360 Mt. Kemble Avenue, Suite 2000 | Morristown, NJ 07960 

Office: +1.973.967.3585 | Fax: 973.998.2599

Artech logo

About Artech

Sourced by ZipRecruiter

Artech is a leading IT staffing and consulting company based in Morristown, NJ, US. Since its foundation in 1992, Artech has mastered in complementing human expertise with technology and business acumen to produce world-class staffing solutions. The company caters to diverse industry sectors, including financial services, healthcare, telecommunication, energy and utilities, supply chain, and retail. It provides IT consulting, project management, professional and staff augmentation, and managed staffing services. Artech's mission is to provide exceptional IT staffing services to its clients by comprehending their business needs and then crafting a customized staffing strategy. Its notable achievement includes being recognized as one of the largest IT staffing companies in the U.S, according to Staffing Industry Analysts (SIA).

Industry

Recruiting and staffing services

Company size

10,000+ Employees

Headquarters location

Morristown, NJ, US

Year founded

1992

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