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Bioinformatics Engineer Jobs in Portland, OR (NOW HIRING)

Bioinformatics Engineer information

See Portland, OR salary details

$45.7K

$139.4K

$253.7K

How much do bioinformatics engineer jobs pay per year?

As of Jul 31, 2026, the average yearly pay for bioinformatics engineer in Portland, OR is $139,431.00, according to ZipRecruiter salary data. Most workers in this role earn between $102,100.00 and $167,000.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Engineer?

A Bioinformatics Engineer is a professional who combines expertise in computer science, statistics, and biology to develop software tools and algorithms for analyzing biological data. They often work with large datasets such as genomic sequences, protein structures, and clinical information to help scientists make sense of complex biological systems. Their work is essential in fields like genomics, personalized medicine, and drug discovery, where managing and interpreting vast amounts of data is crucial. Bioinformatics Engineers may also collaborate with researchers to design experiments and interpret results, bridging the gap between biology and technology.

What are the key skills and qualifications needed to thrive as a Bioinformatics Engineer, and why are they important?

To thrive as a Bioinformatics Engineer, you need a strong background in biology, computer science, and statistics, often supported by a degree in bioinformatics or a related field. Experience with programming languages such as Python or R, familiarity with databases, and knowledge of tools like BLAST, Bioconductor, or next-generation sequencing (NGS) analysis platforms are typically required. Strong problem-solving, analytical thinking, and effective communication skills help you collaborate with interdisciplinary teams and convey complex findings. These skills and qualifications are essential for efficiently analyzing biological data, developing robust computational tools, and advancing research in genomics and life sciences.

What Is Bioinformatics Engineering?

A bioinformatics engineer uses various methods for the analysis of complex biological data such as gene sequence and protein absorption. In this career, your job duties include performing detailed data analysis, developing data queries, and presenting your results back to the research team. The qualifications needed for a career as a bioinformatics engineer include a bachelor’s degree in engineering, statistics, computer science, or mathematics. Some employers prefer a master’s degree as well. You also need strong analytical skills and a good understanding of the biosciences.

What are some common challenges faced by Bioinformatics Engineers when integrating new data sources into existing pipelines?

Bioinformatics Engineers often encounter challenges such as data format inconsistencies, varying quality of datasets, and the need to ensure compatibility with existing analysis pipelines. Integrating new data sources may require custom scripts or tools for parsing and preprocessing, as well as thorough validation to maintain reproducibility and reliability of results. Collaboration with wet-lab scientists and software engineers is essential to clarify data requirements and streamline the integration process.

What is the difference between Bioinformatics Engineer vs Bioinformatics Analyst?

AspectBioinformatics EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentResearch labs, biotech companies, pharmaceutical firmsResearch institutions, healthcare organizations, biotech companies
Employer & Industry UsageDevelops tools, pipelines, and software for biological data analysisInterprets data, performs statistical analysis, and reports findings

While both roles require a background in bioinformatics and involve working with biological data, Bioinformatics Engineers focus on developing software and tools, whereas Bioinformatics Analysts primarily analyze and interpret data to support research and decision-making.

What are the most commonly searched types of Bioinformatics Engineer jobs in Portland, OR? The most popular types of Bioinformatics Engineer jobs in Portland, OR are:
What are popular job titles related to Bioinformatics Engineer jobs in Portland, OR? For Bioinformatics Engineer jobs in Portland, OR, the most frequently searched job titles are:
Infographic showing various Bioinformatics Engineer job openings in Portland, OR as of July 2026, with employment types broken down into 100% Full Time. Highlights an 67% In-person, and 33% Remote job distribution, with an average salary of $138,982 per year, or $66.8 per hour.

Scientist II, Field Applications Bioinformatics Support

PacBio

Portland, OR

$93K - $140K/yr

Full-time

Posted yesterday

New


Job description

Scientist II, Field Applications Bioinformatics Support


PacBio (NASDAQ: PACB) is a premier life science technology company that designs, develops, and manufactures advanced sequencing solutions to help scientists and clinical researchers resolve genetically complex problems. Our mission is to enable the promise of genomics to better human health. Genomics is core to all biological processes, and our advanced genomics tools provide scientists and clinical researchers the insights to better understand biology and health.


We are looking for an experienced bioinformatics support scientist with a strong customer focus to enable and support data analysis for our customers and collaborators. In this role, they will be responsible to train customers for PacBio data analysis, support customers pre- and post-sales, perform data analysis, and function as a link between customers and PacBio.


The candidate will combine bioinformatics, molecular biology, and software expertise. The ability to communicate with customers and internal teams are important aspects of this role. Our ideal candidate is a well-rounded top performer who can be a key contributor in a fast-pacing commercial environment, interacting with customers, scientists, and engineers from a wide variety of backgrounds.


Essential duties and responsibilities:

  • Assist and enable customers and collaborators to ensure successful use of PacBio data analysis software
  • Train customers on PacBio HiFi sequencing data characteristics and analysis tools, including SMRT Link software
  • Be the primary contact for customers to understand their sequencing data
  • Ensure timely bioinformatics and software assistance in response to customer inquiries
  • Support sales in conducting scientific presentations, technical discussions, and customer meetings
  • Work closely with application specialists, sales, service engineers, and technical support
  • Provide customer feedback to product marketing and software development
  • Support roll-out of new software and assist with software installations
  • Work with customers and internal teams (FAS, service engineers, tech support) to prepare new instruments installations
  • The role is field based, and up to 20% travel for onsite support and training is expected

Required Qualifications:

  • MSc/PhD in life sciences (molecular biology, biochemistry), bioinformatics, or related field
  • 2+ years' experience in bioinformatics, data management or tech support, ideally in life sciences industry
  • Well-experienced with high throughput DNA sequencing data analyses and pipelines.
  • Knowledge of state-of-the-art sequence analysis tools and workflows, such as sequence alignment, variant calling, de novo assembly, genome visualization, transcript mapping
  • Understanding of Unix systems administration, networking, and large-scale compute hardware
  • Experience with bash scripting, Python, and R
  • Excellent troubleshooting capabilities, and experience with good practice in customer support
  • Track record of conducting scientific presentations in person and virtually to internal and external audiences
  • Excellent verbal, written, and interpersonal communication skills
  • Strong time management, organizational and planning skills
  • Great cross-functional team player
  • Customer-focused mindset with the empathy to understand different levels of customers
  • Good networking and customer relationship building skills
  • Ability to work in a fast paced and growing commercial environment.
  • Valid driver's license with a clean driving record.
  • Live near an international airport

Preferred Experience:

  • Experience with PacBio data and tools
  • Experience with WDL/snakemake/nextflow
  • Previous work with CRM platforms is a plus, in particular Salesforce
  • Proven ability and motivation to work independently, i.e., in a home office-based position
  • Wet lab experience and basic knowledge of DNA sequencing instruments and library preparation protocols is a plus

Candidates must have current authorization to work in the United States without the need for present or future sponsorship.


You may be required from time to time to visit and work at PacBio locations and for such times as the Company considers necessary for the proper performance of your duties.


All listed tasks and responsibilities are deemed as essential functions to this position; however, business conditions may require reasonable accommodations for additional tasks and responsibilities.


All qualified applicants will receive consideration for employment without regard to race, sex, color, religion, national origin, protected veteran status, or on the basis of disability, gender identity, and sexual orientation.


#LI-Remote

Salary Range:

$93,400.00 - $140,000.00


To all Staffing and Recruiting Agencies: Our Careers Site is only for individuals seeking a job at PacBio. Staffing and recruiting agencies and individuals being represented by an agency are not authorized to use this site or to submit profiles, applications or resumes, and any such submissions will be considered unsolicited. PacBio does not accept unsolicited resumes or applications from agencies. Please do not forward resumes to our jobs alias, PacBio employees or any other company location. PacBio is not responsible for any fees related to unsolicited resumes/applications.


All qualified applicants will receive consideration for employment without regard to race, sex, color, religion, national origin, protected veteran status, or on the basis of disability, gender identity, and sexual orientation.

If you are an individual with a disability and require a reasonable accommodation to complete any part of the application process, or are limited in the ability or unable to access or use this online application process and need an alternative method for applying, you may contact us at 650-521-8000, or careers@pacificbiosciences.com for assistance.

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