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Bioinformatics Data Engineer Jobs in Boston, MA (NOW HIRING)

Mass General Brigham

Bioinformatician I

Boston, MA · On-site

$75K - $109K/yr

... programming languages, and computational sciences. - Demonstrated ability working with open-source bioinformatics software. - Possess strong analytical skills, including critical thinking, data ...

New

Massgeneralbrigham

Bioinformatician I

Boston, MA · Hybrid

$75K - $109K/yr

... programming languages, and computational sciences. - Demonstrated ability working with open-source bioinformatics software. - Possess strong analytical skills, including critical thinking, data ...

New

Winaxis

Cloud Infrastructure/AI/ML Engineer

Boston, MA · On-site

$116K - $153K/yr

Cloud Infrastructure/AI/ML Engineer (Contract, 12+ months, Hybrid) - Location : Waltham, MA (Hybrid ... data for diverse bioinformatics workflows - Technical Skills : - Minimum 3+ years in cloud ...

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All JobsBioinformatics Data Engineer JobsBioinformatics Data Engineer Jobs in Boston, MA

Bioinformatics Data Engineer information

See Boston, MA salary details

$46.7K

$142.4K

$259.1K

How much do bioinformatics data engineer jobs pay per year?

As of Aug 9, 2026, the average yearly pay for bioinformatics data engineer in Boston, MA is $142,376.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,300.00 and $170,600.00 per year, depending on experience, location, and employer.

How do bioinformatics data engineers typically collaborate with researchers and other teams in a biomedical organization?

Bioinformatics Data Engineers often work closely with biologists, data scientists, and software engineers to ensure the effective collection, processing, and analysis of complex biological data. They regularly participate in cross-functional meetings to understand research goals, develop data pipelines, and troubleshoot data-related issues. Collaboration is essential, as engineers must translate scientific requirements into technical solutions, provide data access and visualization tools, and support researchers in extracting meaningful insights from large datasets. This teamwork fosters a dynamic environment where communication and adaptability are key.

What does a bioinformatics data engineer do?

A bioinformatics data engineer designs, develops, and maintains data pipelines and infrastructure to process large biological datasets. They work with tools like SQL, Python, and cloud platforms to ensure data is accessible, accurate, and efficiently managed for research and analysis purposes.

What is the difference between Bioinformatics Data Engineer vs Bioinformatics Analyst?

AspectBioinformatics Data EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentData pipelines, database management, software developmentData interpretation, report generation, biological data analysis
Employer & Industry UsageBiotech companies, research labs, pharmaResearch institutions, healthcare, biotech
Common Search & ComparisonFocuses on data infrastructure and pipelinesFocuses on biological data interpretation

The main difference between a Bioinformatics Data Engineer and a Bioinformatics Analyst lies in their focus areas. Data Engineers build and maintain data pipelines and infrastructure, while Analysts interpret biological data to generate insights. Both roles require strong bioinformatics knowledge, but Data Engineers emphasize programming and data management, whereas Analysts focus on biological interpretation and reporting.

What is a bioinformatics data engineer?

A Bioinformatics Data Engineer is a professional who designs, develops, and maintains data infrastructure for managing and analyzing large-scale biological data, such as genomics or proteomics datasets. They build pipelines and tools to process, store, and retrieve complex biological information efficiently. Their work enables researchers and scientists to access and interpret data for discoveries in fields like medicine, genetics, and biotechnology. Often, they collaborate closely with bioinformaticians, data scientists, and software engineers to support research initiatives.

What are the key skills and qualifications needed to thrive as a bioinformatics data engineer, and why are they important?

To thrive as a Bioinformatics Data Engineer, you need a strong background in computer science, biology, and statistics, often supported by a relevant degree and experience in data engineering. Proficiency with programming languages (such as Python, R, or SQL), bioinformatics tools, cloud platforms, and big data frameworks (like Hadoop or Spark) is typically required. Strong problem-solving, collaboration, and communication skills help you work effectively across interdisciplinary teams and convey complex findings. These skills ensure accurate analysis, efficient data pipeline development, and meaningful insights that advance biological research and healthcare solutions.
What are popular job titles related to Bioinformatics Data Engineer jobs in Boston, MA? For Bioinformatics Data Engineer jobs in Boston, MA, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Data Engineer jobs in Boston, MA look for? The top searched job categories for Bioinformatics Data Engineer jobs in Boston, MA are:
What cities near Boston, MA are hiring for Bioinformatics Data Engineer jobs? Cities near Boston, MA with the most Bioinformatics Data Engineer job openings:
Bioinformatics Data Engineer jobs near you
Infographic showing various Bioinformatics Data Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 84% Full Time, 3% Part Time, and 13% Contract. Highlights an 84% In-person, and 16% Remote job distribution, with an average salary of $142,376 per year, or $68.5 per hour.

Part Time Lecturer, Applied Bioinformatics (Cell & Gene Therapies Program)

Northeastern University

Boston, MA • On-site

Part-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 19 hours ago

Job description

About the Opportunity
Job Summary
We invite applications for Part-time Lecturer (PTL) positions at the graduate level. We seek a colleague with expertise in bioinformatics and computational genomics to teach BIOL 6216 Applied Bioinformatics for the Cell and Gene Therapy Master's Programs, depending on program needs and enrollment. This course introduces foundational bioinformatics concepts, computational techniques, and programming skills essential for analyzing genomic and sequencing data, particularly in the context of genetic modification and therapeutic genome editing.
Key Responsibilities
The Part-time Lecturer will review and learn key teaching points within existing instructor guides and materials, prepare and deliver lectures, demonstrations, and hands-on exercises based on provided course content, and facilitate in-person or online class discussions that encourage active learning and respectful debate. They will guide students through bioinformatics analyses in the context of genetic modification and therapeutic genome editing, including sequencing data interpretation and computational workflows, provide timely feedback, grading, and coaching to support student learning, and maintain consistent engagement with students regarding their performance and progress; and adhering to Northeastern's policies.
Part-time instructors work under the direction of the program director and will hold office hours as appropriate
Qualifications
The ideal candidate will hold a Ph.D. in Bioinformatics, Computational Biology, Genomics, Biomedical Engineering, or a closely related field, and have at least three to five years of experience in bioinformatics, preferably in a therapeutic or research setting. They should have demonstrated experience teaching or supporting graduate-level courses, particularly in bioinformatics or genomic data analysis, and possess strong programming skills in languages commonly used in bioinformatics, such as Python and R. Candidates should also have experience with genomic data analysis tools and platforms, including NGS pipelines, RNA-seq, or variant calling, and a strong understanding of cell and gene therapy concepts and applications. Effective communication skills, an open and supportive teaching style, and prior experience in a diverse higher education environment are also highly desirable.
Documents to Submit
• CV/resume
• Cover letter
• Statement of teaching experience
• Three references (include name, title, company, phone, email, and relationship, e.g., current supervisor)
Position Type
Academic
Additional Information
Northeastern University considers factors such as candidate work experience, education and skills when extending an offer.
Northeastern has a comprehensive benefits package for benefit eligible employees. This includes medical, vision, dental, paid time off, tuition assistance, wellness & life, retirement- as well as commuting & transportation. Visit https://hr.northeastern.edu/benefits/ for more information.
All qualified applicants are encouraged to apply and will receive consideration for employment without regard to race, religion, color, national origin, age, sex, sexual orientation, disability status, or any other characteristic protected by applicable law.
Pay Range:

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