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Bioinformatic Engineer Jobs in Washington (NOW HIRING)

Axle

Bioinformatics Engineer

Rockville, MD

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of Health (NIH) supporting the Rockville, MD. Benefits We Offer: * 100% Medical, Dental & Vision Coverage ...

Axle

Bioinformatics Engineer

Rockville, MD

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of Health (NIH) supporting the Rockville, MD. Benefits We Offer: * 100% Medical, Dental & Vision Coverage ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of Health (NIH) supporting the Rockville, MD. Benefits We Offer: * 100% Medical, Dental & Vision Coverage ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

They are seeking a Bioinformatics Engineer to join their team supporting major pharmaceutical clients, focusing on optimizing and integrating bioinformatics workflows for high-throughput sequencing ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Axle

Bioinformatics Scientist

Bethesda, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Bioinformatics Scientist To be considered for this position, please upload a document as your Cover ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD · On-site

$65K - $108K/yr

Provide programming and troubleshooting support to the Federal Government in the dissemination of ... Evaluate and adapt bioinformatics techniques based on scientific literature, available resources ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD

$65K - $108K/yr

Provide programming and troubleshooting support to the Federal Government in the dissemination of ... Evaluate and adapt bioinformatics techniques based on scientific literature, available resources ...

Axle

Data Engineer

Rockville, MD · On-site

$116K - $140K/yr

Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics, Information Systems, Engineering, or a related field, or equivalent practical experience. Proven ...

Axle

Data Engineer

Rockville, MD

$116K - $140K/yr

Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics, Information Systems, Engineering, or a related field, or equivalent practical experience. Proven ...

Axle

Data Engineer

Rockville, MD · On-site

$116K - $140K/yr

Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics, Information Systems, Engineering, or a related field, or equivalent practical experience. Proven ...

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All JobsBioinformatic Engineer JobsBioinformatic Engineer Jobs in Washington

Bioinformatic Engineer information

See Washington salary details

$37.4K

$101K

$160.8K

How much do bioinformatic engineer jobs pay per year?

As of Aug 6, 2026, the average yearly pay for bioinformatic engineer in Washington is $101,009.00, according to ZipRecruiter salary data. Most workers in this role earn between $75,300.00 and $123,500.00 per year, depending on experience, location, and employer.

What is the difference between Bioinformatic Engineer vs Bioinformatics Analyst?

AspectBioinformatic EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fieldsBachelor's or Master's in Bioinformatics, Biology, or related fields
Work EnvironmentResearch labs, biotech companies, healthcare institutionsResearch institutions, healthcare, pharmaceutical companies
Employer & Industry UsageDevelops tools, pipelines, and software for biological data analysisAnalyzes biological data, interprets results, and reports findings

While both roles involve biological data, Bioinformatic Engineers focus on developing computational tools and pipelines, whereas Bioinformatics Analysts primarily interpret data and generate insights. Both positions require similar educational backgrounds and are vital in research and healthcare settings, but their core responsibilities differ in development versus analysis.

What are common challenges faced by bioinformatic engineers when working with large-scale genomic data?

Bioinformatic Engineers often encounter challenges related to managing and processing vast amounts of genomic data, which can require significant computational resources and efficient data handling strategies. Ensuring data integrity, reproducibility of analyses, and effective collaboration with multidisciplinary teams of biologists, statisticians, and software developers are also key aspects of the role. Staying updated with the latest bioinformatics tools and pipelines is essential, as the field evolves rapidly. Overcoming these challenges requires strong problem-solving skills, attention to detail, and the ability to communicate complex findings to non-technical stakeholders.

What skills and qualifications are needed to thrive as a bioinformatic engineer?

To thrive as a Bioinformatic Engineer, you need a strong background in computational biology, programming (such as Python or R), statistics, and a relevant degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (like BLAST, GATK, or Bioconductor), data analysis platforms, and experience with databases such as SQL are typically required. Strong problem-solving abilities, attention to detail, and effective communication skills help you interpret complex data and collaborate with multidisciplinary teams. These skills are essential for accurately analyzing biological data, deriving meaningful insights, and facilitating research or clinical advancements.

What is a bioinformatic engineer?

Bioinformatic Engineers are professionals who develop and apply computational tools and techniques to analyze biological data, such as DNA sequences, protein structures, and genetic information. They combine expertise in computer science, biology, and mathematics to process large datasets generated by modern biological experiments. Their work supports research in areas like genomics, drug discovery, and personalized medicine by helping scientists make sense of complex biological data.
What are popular job titles related to Bioinformatic Engineer jobs in Washington? For Bioinformatic Engineer jobs in Washington, the most frequently searched job titles are:
What job categories do people searching Bioinformatic Engineer jobs in Washington look for? The top searched job categories for Bioinformatic Engineer jobs in Washington are:
What cities in Washington are hiring for Bioinformatic Engineer jobs? Cities in Washington with the most Bioinformatic Engineer job openings:
Bioinformatic Engineer jobs near you

Bioinformatics Engineer

Axle

Rockville, MD

Other

Medical, Dental, Vision, Retirement, PTO

Re-posted 15 days ago

Job description

(ID: 2026-2391)


Axle is a bioscience and information technology company that offers advancements in translational research, biomedical informatics, and data science applications to research centers and healthcare organizations nationally and abroad. With experts in biomedical science, software engineering, and program management, we focus on developing and applying research tools and techniques to empower decision-making and accelerate research discoveries. We work with some of the top research organizations and facilities in the country including multiple institutes at the National Institutes of Health (NIH).


Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of Health (NIH) supporting the Rockville, MD.


Benefits We Offer:

  • 100% Medical, Dental & Vision Coverage for Employees
  • Paid Time Off and Paid Holidays
  • 401K match up to 5%
  • Educational Benefits for Career Growth
  • Employee Referral Bonus
  • Flexible Spending Accounts:
    • Healthcare (FSA)
    • Parking Reimbursement Account (PRK)
    • Dependent Care Assistant Program (DCAP)
    • Transportation Reimbursement Account (TRN)

Axle is seeking a skilled Bioinformatics Engineer to join our team supporting major pharmaceutical clients. In this role, you will review, assess, optimize, integrate, and extend production-grade bioinformatics workflows for high-throughput sequencing analysis. The ideal candidate combines deep expertise in genomics analysis methods with strong software engineering practices and cloud computing experience. 

Key Responsibilities 

  • Evaluate existing bioinformatics pipelines for performance, accuracy, and maintainability, identifying opportunities for optimization and enhancement

  • Develop, extend, and maintain Nextflow workflows for bulk RNA-seq, single-cell RNA-seq, DNA variant calling, methylation analysis, and emerging assay types

  • Architect scalable solutions capable of processing thousands of samples efficiently on Google Cloud Platform

  • Optimize data input/output operations across pipeline modules to minimize bottlenecks and reduce computational costs

  • Prepare and structure analysis outputs for visualization platforms and downstream statistical or machine learning applications

  • Implement best practices for workflow versioning, containerization, testing, and documentation

  • Collaborate with computational biologists, data scientists, and software engineers to integrate pipelines into broader analytical ecosystems

  • Stay current with advances in sequencing technologies and analytical methods, evaluating and incorporating new tools as appropriate 

Required Qualifications 

  • Master's degree in bioinformatics, computational biology, computer science, or a related field (or equivalent experience)

  • 3+ years of hands-on experience developing and maintaining bioinformatics pipelines in a production environment

  • Proficiency with Nextflow (DSL2) and familiarity with workflow management concepts

  • Strong experience with RNA-seq analysis (both bulk and single-cell) and DNA sequencing workflows (variant calling, methylation)

  • Working knowledge of Google Cloud Platform services (Compute Engine, Cloud Storage, Batch, Life Sciences API, or similar)

  • Proficiency in Python and/or R for scripting, data manipulation, and tool development

  • Experience with containerization technologies (Docker, Singularity)

  • Familiarity with version control systems (Git) and CI/CD practices

  • Strong understanding of genomic file formats (FASTQ, BAM, VCF, BED) and common bioinformatics tools (STAR, Salmon, BWA, GATK, Bismark, Cell Ranger, Seurat, Scanpy) 

Preferred Qualifications 

  • PhD in a relevant field

  • Experience with nf-core pipelines and community standards

  • Familiarity with workflow orchestration at scale (Cromwell, AWS Batch, or similar platforms)

  • Experience optimizing cloud costs and resource utilization for large-scale genomics workloads

  • Knowledge of data visualization tools and frameworks (e.g., R Shiny, Plotly, custom dashboards)

  • Experience in pharmaceutical, biotech, or regulated research environments

  • Familiarity with FAIR data principles and metadata standards 

What We Offer 

  • Opportunity to work on cutting-edge genomics projects with industry-leading pharmaceutical partners

  • Collaborative environment with experts in bioinformatics, data science, and software engineering

  • Professional development and growth opportunities

  • Competitive salary and benefits package 


Disclaimer: The above description is meant to illustrate the general nature of work and level of effort being performed by individuals assigned to this position or job description. This is not restricted as a complete list of all skills, responsibilities, duties, and/or assignments required. Individuals may be required to perform duties outside of their position, job description or responsibilities as needed.


The diversity of Axle's employees is a tremendous asset. We are firmly committed to providing equal opportunity in all aspects of employment and will not tolerate any illegal discrimination or harassment based on age, race, gender, religion, national origin, disability, marital status, covered veteran status, sexual orientation, status with respect to public assistance, and other characteristics protected under state, federal, or local law and to deter those who aid, abet, or induce discrimination or coerce others to discriminate.


Accessibility: If you need an accommodation as part of the employment process please contact: careers@axleinfo.com


This role has a market-competitive salary with an anticipated base compensation range listed below. Actual salaries will vary depending on a candidate's experience, qualifications, skills, and location.

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