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Bioinformatic Data Engineer Jobs (NOW HIRING)

System One

Data Scientist III

Ridgefield, CT · Remote

$45 - $50/hr

Programming experience with Python and R for bioinformatic data analysis in unix-like systems. * Proficiency in working with bulk and single cell NGS data * Proficiency in working with high ...

System One

Data Scientist III

Ridgefield, CT · Remote

$45 - $50/hr

Programming experience with Python and R for bioinformatic data analysis in unix-like systems. * Proficiency in working with bulk and single cell NGS data * Proficiency in working with high ...

System One

Data Scientist III

Ridgefield, CT · Remote

$45 - $50/hr

Programming experience with Python and R for bioinformatic data analysis in unix-like systems. * Proficiency in working with bulk and single cell NGS data * Proficiency in working with high ...

Axle

Bioinformatics/Data Scientist

Frederick, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics/Data Scientist to join our vibrant team at the National Institutes ...

Axle

Bioinformatics/Data Scientist

Frederick, MD · On-site

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics/Data Scientist to join our vibrant team at the National Institutes ...

Axle

Bioinformatics/Data Scientist

Frederick, MD

With experts in biomedical science, software engineering, and program management, we focus on ... Axle is seeking a Bioinformatics/Data Scientist to join our vibrant team at the National Institutes ...

Black Canyon Consulting LLC

Data Engineer

Bethesda, MD · On-site

$122K - $146K/yr

Black Canyon Consulting LLC is seeking Data Engineers to support their work for the National Center ... bioinformatic algorithms and developing cloud-ready tools and pipelines. Responsibilities : • You ...

Black Canyon Consulting LLC

Data Engineer

Bethesda, MD · On-site

$122K - $146K/yr

Black Canyon Consulting LLC is seeking Data Engineers to support their work for the National Center ... bioinformatic algorithms and developing cloud-ready tools and pipelines. Responsibilities : • You ...

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Bioinformatic Data Engineer information

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$44.5K

$129.7K

$177.5K

How much do bioinformatic data engineer jobs pay per year?

As of Sep 10, 2026, the average yearly pay for bioinformatic data engineer in the United States is $129,716.00, according to ZipRecruiter salary data. Most workers in this role earn between $114,500.00 and $137,500.00 per year, depending on experience, location, and employer.

What is a bioinformatic data engineer?

Bioinformatic Data Engineers are professionals who design, build, and maintain data pipelines and infrastructure for storing, processing, and analyzing large-scale biological and genomic data. They work at the intersection of biology, computer science, and data engineering to ensure that complex datasets from experiments, sequencing platforms, or clinical studies can be efficiently managed and analyzed. Their responsibilities often include developing software tools, optimizing data workflows, and collaborating with bioinformaticians and researchers to enable scientific discovery. This role requires expertise in programming, database systems, and understanding of biological data formats and standards.

What are the key skills and qualifications needed to thrive as a bioinformatic data engineer?

To thrive as a Bioinformatic Data Engineer, you need strong programming skills (such as Python, R, or Java), a solid background in computational biology, and experience with large-scale data analysis, typically supported by a degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools, pipeline development, cloud platforms, and data management systems is commonly required, and certifications in cloud technologies or data engineering are advantageous. Strong problem-solving, critical thinking, and collaboration skills help bridge the gap between biological research and data infrastructure needs. These competencies ensure accurate analysis, scalable solutions, and effective communication within multidisciplinary teams, driving scientific discovery and innovation.

What are some common challenges faced by bioinformatic data engineers when integrating diverse biological datasets?

Bioinformatic Data Engineers often encounter challenges when integrating datasets from various sources due to differences in data formats, quality, and annotation standards. Ensuring data compatibility and consistency requires a strong understanding of both computational methods and biological context. Additionally, they must address issues like missing values, large-scale data storage, and efficient data retrieval to support downstream analyses. Collaboration with biologists, software engineers, and data scientists is key to successfully overcoming these challenges and delivering valuable insights.

What is the difference between Bioinformatic Data Engineer vs Bioinformatics Analyst?

AspectBioinformatic Data EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentData pipelines, database management, software development in research or biotech companiesData analysis, interpretation, and reporting in research labs or healthcare settings
Employer & Industry UsageTech-driven biotech firms, research institutions, pharma companiesAcademic institutions, healthcare providers, research organizations

While both roles require a background in bioinformatics and data handling, the Bioinformatic Data Engineer focuses on building and maintaining data infrastructure and pipelines, whereas the Bioinformatics Analyst emphasizes analyzing and interpreting biological data to generate insights.

What cities are hiring for Bioinformatic Data Engineer jobs?

Cities with the most Bioinformatic Data Engineer job openings:

What states have the most Bioinformatic Data Engineer jobs?

States with the most job openings for Bioinformatic Data Engineer jobs include:

What are popular job titles related to Bioinformatic Data Engineer jobs?

For Bioinformatic Data Engineer jobs, the most frequently searched job titles are:

Bioinformatics Data Engineer / Programmer

Santa Clara, CA • On-site

Omega Solutions, Inc.
See more jobs at Omega Solutions, Inc.external

Full-time

Re-posted 19 days ago

Job description

Job Summary:
Omega Solutions, Inc. is seeking a Bioinformatics Data Engineer to support clinical research through data solutions. The role involves developing clinical programming code and collaborating with various teams to ensure data integrity and quality throughout the data lifecycle.
Responsibilities:
• Contribute to derived clinical feature workflows for clinical study data, working from raw data extracts, through data dissemination with a strong focus on automation and data QC.
• Assist in developing and managing interactive data visualization and analytics tools for reporting.
• Play a key role in understanding user requirements, implementing systems and authoring procedures related to system use.
• Maintain data integrity and quality throughout the data lifecycle, including ensuring clinical study-related blinding where appropriate.
Qualifications:
Required:
• BS or MS in quantitative scientific fields (computer science, engineering, mathematics, statistics, bioinformatics, etc.)
• Experience with R or Python programming
• Experience with cross-functional collaboration while ensuring data quality and commitment to analysis reproducibility
• Experience with data visualization and analytics tools
• Excellent interpersonal communication (written and verbal) and organizational skills
• Excellent team player with a demonstrated track record of success in a cross-functional team environment
• Consistent commitment to delivering on team goals with a sense of shared urgency
Preferred:
• Experience with CDISC data models is a plus
• Experience with Amazon Web Services is a plus
Company:
Omega was incorporated in 2007 in the State of California to offer high end IT Solutions ranging from IT Software and product development to technology deployment and specialize in providing software solutions to diverse business sectors in USA and World-wide. Founded in 2007, the company is headquartered in Santa Clara, USA, with a team of 11-50 employees. The company is currently Early Stage.

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