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Algorithm Engineer Jobs in San Diego, CA (NOW HIRING)

Qualcomm

Camera Modelling Engineer

San Diego, CA · On-site

$99K - $149K/yr

Engineering Group, Engineering Group > Camera Engineering General Summary: The Multimedia Camera ... Responsibilities will include: • Imaging algorithm modeling in C/C++ (Using C/C++ on Windows ...

NTENT

Machine Learning Engineer

Carlsbad, CA · On-site

Manage machine learning algorithm lifecycle. * Coordinate data collection and annotation efforts ... Strong programming skills in Python and Scala required. Experience in other programming languages ...

NTENT

Machine Learning Engineer

Carlsbad, CA

Manage machine learning algorithm lifecycle. * Coordinate data collection and annotation efforts ... Strong programming skills in Python and Scala required. Experience in other programming languages ...

General Atomics

Engineer IV

Poway, CA · On-site

$98K - $171K/yr

Develop flight control and algorithm improvements based on engineering design principles. Utilize varying methodologies including classical controls, linear and non-linear modeling, air vehicle and ...

Leidos

Research Engineer

San Diego, CA

$87K - $157K/yr

The qualified Research Engineer will be part of a strong team of scientists and engineers in our ... Primary Responsibilities Develop innovative signal processing algorithms and data analysis ...

Leidos

Software Engineer

San Diego, CA · On-site

$87K - $157K/yr

If you're driven by innovation, energized by collaboration, and ready to see your algorithms power real-world missions-you belong here. What You'll Do * Collaborate with scientists and engineers to ...

Leidos

Software Engineer

San Diego, CA · On-site +1

$87K - $157K/yr

If you're driven by innovation, energized by collaboration, and ready to see your algorithms power real-world missions-you belong here. What You'll Do * Collaborate with scientists and engineers to ...

SwiftCruit

Lead Machine Learning Engineer

Carlsbad, CA · On-site

$187.90 - $252/hr

Lead Machine Learning Engineer Req ID: 10154653 Disney Entertainment and ESPN Product & Technology ... This includes our core ranking algorithms, content and user understanding models and graphs, as ...

Cesna Group

Computer Vision R&D Engineer

San Diego, CA · On-site

$100K - $200K/yr

As a computer vision engineer, you will be using cutting-edge vision and AI algorithms to integrate into robotics systems designed by worldwide teams of software, mechatronics, electronics, physics ...

Leidos

Research Engineer

San Diego, CA · On-site

$87K - $157K/yr

The qualified Research Engineer will be part of a strong team of scientists and engineers in our ... The role requires the use of physical and mathematical principles for the development of algorithms ...

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Showing results 41-60

All JobsAlgorithm Engineer JobsAlgorithm Engineer Jobs in San Diego, CA

Algorithm Engineer information

See San Diego, CA salary details

$63.2K

$118.5K

$215.5K

How much do algorithm engineer jobs pay per year?

As of Aug 10, 2026, the average yearly pay for algorithm engineer in San Diego, CA is $118,521.00, according to ZipRecruiter salary data. Most workers in this role earn between $85,500.00 and $140,700.00 per year, depending on experience, location, and employer.

What are the typical challenges an algorithm engineer faces in their day-to-day work?

Algorithm Engineers often encounter complex problems that require creative, efficient solutions within strict performance or resource constraints. They may need to optimize existing algorithms, develop new ones from scratch, and ensure seamless integration into larger software systems, often while balancing accuracy, speed, and scalability. Collaborating with other engineers, data scientists, and product teams to align technical efforts with business goals is also a regular part of the job. Staying updated with the latest advancements in algorithms and technology is essential, making continuous learning a key aspect of the role.

How much does an Algorithm Engineer make?

The average salary for an Algorithm Engineer typically ranges from $80,000 to $150,000 annually, depending on experience, location, and industry. Senior roles or those with specialized skills in machine learning or data analysis can earn higher salaries, often exceeding $180,000. Compensation may also include bonuses and stock options in some companies.

What does an algorithm engineer do?

An Algorithm Engineer designs, develops, and optimizes algorithms to solve complex computational problems. They analyze data, improve system performance, and implement mathematical models for various applications, such as machine learning, computer vision, and optimization. This role requires proficiency in programming languages like Python or C++, strong mathematical skills, and an understanding of data structures and algorithms. Algorithm Engineers work closely with software developers, data scientists, and researchers to integrate efficient solutions into real-world systems.

What are the key skills and qualifications needed to thrive as an algorithm engineer?

To thrive as an Algorithm Engineer, you need a strong background in mathematics, computer science, and programming, usually demonstrated with a degree in these fields and experience in algorithm design and analysis. Familiarity with languages like Python, C++, or Java, and tools such as MATLAB or TensorFlow, as well as relevant certifications like those in data science or machine learning, are typically advantageous. Outstanding problem-solving abilities, analytical thinking, and effective communication are critical soft skills for success in this role. These competencies are crucial because they enable Algorithm Engineers to design efficient, innovative solutions and collaborate seamlessly with multidisciplinary teams.

What are the most commonly searched types of Algorithm Engineer jobs in San Diego, CA? The most popular types of Algorithm Engineer jobs in San Diego, CA are:
What are popular job titles related to Algorithm Engineer jobs in San Diego, CA? For Algorithm Engineer jobs in San Diego, CA, the most frequently searched job titles are:
What job categories do people searching Algorithm Engineer jobs in San Diego, CA look for? The top searched job categories for Algorithm Engineer jobs in San Diego, CA are:
What cities near San Diego, CA are hiring for Algorithm Engineer jobs? Cities near San Diego, CA with the most Algorithm Engineer job openings:
Algorithm Engineer jobs near you
Infographic showing various Algorithm Engineer job openings in San Diego, CA as of August 2026, with employment types broken down into 84% Full Time, 4% Part Time, 2% Temporary, and 10% Contract. Highlights an 78% In-person, 6% Hybrid, and 16% Remote job distribution, with an average salary of $118,521 per year, or $57 per hour.

Principal Engineer, State Estimation (R4602)

Shield AI

San Diego, CA • On-site

$270K - $400K/yr

Full-time

Re-posted 10 days ago

Job description

Shield AI is a venture-backed defense-tech company with the mission of protecting service members and civilians with intelligent systems. Its products include Hivemind autonomy software, V-BAT and X-BAT aircraft, and Aechelon simulation and synthetic reality technologies. With offices and facilities across the U.S., Europe, the Middle East, and Asia-Pacific, Shield AI's technology actively supports operations worldwide. For more information, visit www.shield.ai. Follow Shield AI on LinkedIn, X, Instagram, and YouTube. 

Job Description:
We are looking for an experienced state estimation engineer to design, develop, and support the deployment of safety-critical navigation solutions for aerospace platforms. This role requires deep expertise in state estimation theory, extensive practical experience implementing ownship navigation systems in the aerospace domain, and strong software development skills for production-quality navigation code. The engineer will design and implement a unified navigation architecture that supports traditional GNSS/IMU fusion while being extensible to all-source navigation strategies incorporating diverse sensing modalities for GPS-degraded and denied environments.
What you'll do:
Navigation System Architecture & Design:
  • Establish navigation performance requirements and error budgets for safety-critical applications 
  • Support decomposition of navigation requirements into allocations for sensors, estimation algorithms, and software components 
  • Design detailed software architecture for state estimation implementations, including module interfaces and data flow 
Algorithm Development & Implementation:
  • Design and implement Extended Kalman Filter algorithms for navigation applications, with broad understanding of state estimation theory and alternative filtering approaches 
  • Implement tightly-coupled and loosely-coupled GNSS/INS integration algorithms 
  • Integrate diverse sensing modalities (vision, RF, celestial etc.) into multi-sensor fusion framework for GPS-degraded environments 
  • Develop fault detection, isolation, and recovery (FDIR) strategies for navigation systems 
  • Implement integrity monitoring and protection level calculations for safety-critical operations 
Certification & Verification:
  • Develop verification and validation test plans for navigation algorithms 
  • onduct performance analysis including Monte Carlo simulation, covariance analysis, and flight test data evaluation 
  • Document navigation system design, requirements allocation, and compliance evidence 
  • Support safety assessment activities including failure modes and effects analysis 
Technical Leadership:
  • Provide technical guidance on navigation architecture and state estimation approaches 
  • Support trade studies evaluating navigation sensor suites and fusion strategies 
  • Mentor junior engineers on state estimation theory and implementation 
Required qualifications:
  • MS or PhD in Computer Science, Software Engineering, Electrical Engineering, Aerospace Engineering, Mechanical Engineering, Applied Mathematics, or related field 
    15+ years of experience developing state estimation algorithms for aerospace navigation applications 
  • Demonstrated experience implementing GNSS/INS integration solutions 
  • Experience with safety-critical system development and certification processes 
  • Deep understanding of state estimation theory 
  • Experience implementing multi-sensor fusion algorithms in production systems 
  • Strong background in inertial navigation, GNSS positioning, and sensor error modeling 
  • Strong programming skills in C/C++ and Python/MATLAB for algorithm development and analysis 
  • Understanding of integrity monitoring, protection levels, and safety assessment methods 
  • Experience with requirements management and verification/validation processes for certifiable systems 
  • Understanding of GPS/GNSS signal structure, error sources, and performance characteristics 
  • Knowledge of IMU error models, calibration, and Allan variance analysis 
  • Familiarity with alternative navigation sensors (camera, RF ranging, celestial, etc.) 
  • Understanding of navigation performance metrics (accuracy, integrity, continuity, availability)
  • Must be eligible to obtain a clearance
  • Ability to obtain a S//SAR level security clearance desired.
Preferred qualifications:
  • PhD in relevant field with focus on state estimation or navigation 
  • Direct involvement in certified navigation system development from requirements through flight test 
  • Experience with specialized navigation approaches (vision-aided navigation, terrain-referenced navigation, celestial navigation, etc.) 
  • Publications or patents in navigation or state estimation 
  • Experience with GPS/GNSS jamming and spoofing mitigation techniques 
$270,000 - $400,000 a year
#LI-SM1
#LF

Full-time regular employee offer package:
Pay within range listed + Bonus + Benefits + Equity
 
Temporary employee offer package:
Pay within range listed above + temporary benefits package (applicable after 60 days of employment)
 
Salary compensation is influenced by a wide array of factors including but not limited to skill set, level of experience, licenses and certifications, and specific work location. All offers are contingent on a cleared background and possible reference check. Military fellows and part-time employees are not eligible for benefits. Please speak to your talent acquisition representative for more information.
 
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Shield AI is proud to be an equal opportunity workplace and is an affirmative action employer. We are committed to equal employment opportunity regardless of race, color, ancestry, religion, sex, national origin, sexual orientation, age, marital status, disability, gender identity or Veteran status. If you have a disability or special need that requires accommodation, please let us know. 
We may use artificial intelligence (AI) tools to support parts of the hiring process, such as reviewing applications, analyzing resumes, or assessing responses and identifying potential inconsistencies or verification signals in application materials based on available information. These tools assist our recruitment team but do not replace human judgment. Final hiring decisions are ultimately made by humans. If you would like more information about how your data is processed, please contact us.
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