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Spatial Transcriptomics Jobs in San Francisco, CA

You'll recruit across the assay platforms we benchmark: spatial transcriptomics, scRNA-seq, proteomics, genomics, biosurveillance, omics, and other emerging fields, mainly sourcing wet-lab and ...

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Spatial Transcriptomics information

See San Francisco, CA salary details

$57.7K

$239.7K

$471.3K

How much do spatial transcriptomics jobs pay per year?

As of Sep 6, 2026, the average yearly pay for spatial transcriptomics in San Francisco, CA is $239,720.00, according to ZipRecruiter salary data. Most workers in this role earn between $92,500.00 and $471,300.00 per year, depending on experience, location, and employer.

What is spatial transcriptomics?

Spatial transcriptomics is an advanced technique that allows scientists to measure gene expression within the spatial context of tissue samples. Unlike traditional RNA sequencing, which loses information about where each gene is expressed, spatial transcriptomics preserves the physical location of gene activity in tissues. This helps researchers better understand how cells function within their native environments and interact with neighboring cells, which is especially valuable in fields like cancer research, neuroscience, and developmental biology. The method combines microscopy, molecular biology, and computational analysis to produce detailed maps of gene expression.

What are the key skills and qualifications needed to thrive as a spatial transcriptomics scientist?

To thrive as a Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree in a life science field. Familiarity with spatial transcriptomics platforms (such as 10x Genomics Visium), next-generation sequencing (NGS) technologies, and data analysis tools like R or Python is essential. Strong problem-solving skills, attention to detail, and effective communication are important soft skills for collaborating on interdisciplinary research projects. These skills and qualities are crucial for generating high-quality spatial gene expression data and translating findings into meaningful biological insights.

What are some common challenges faced by professionals working in spatial transcriptomics, and how can they be addressed?

Professionals in spatial transcriptomics often encounter challenges related to handling large, complex datasets and integrating spatial information with gene expression data. Ensuring high-quality sample preparation and mastering advanced imaging or sequencing technologies are also frequent hurdles. These challenges can be addressed by collaborating closely with multidisciplinary teams—including bioinformaticians, molecular biologists, and imaging specialists—and staying up-to-date with the latest software tools and protocols. Continuous learning and effective communication within the team are key to overcoming technical and analytical obstacles in this rapidly evolving field.

What cities near San Francisco, CA are hiring for Spatial Transcriptomics jobs?

Cities near San Francisco, CA with the most Spatial Transcriptomics job openings:

Infographic showing various Spatial Transcriptomics job openings in San Francisco, CA as of August 2026, with employment types broken down into 75% Full Time, 21% Part Time, 1% Temporary, and 3% Contract. Highlights an 75% Physical, 2% Hybrid, and 23% Remote job distribution, with an average salary of $239,720 per year, or $115.2 per hour.

Postdoctoral Scientist - Fibrosis, Liver Disease

Gilead

Foster City, CA • On-site

$126K - $164K/yr

Full-time

Medical, Dental, Vision, Life, PTO

Re-posted 11 days ago


Gilead Sciences rating

8.9

Company rating: 8.9 out of 10

Based on 12 frontline employees who took The Breakroom Quiz

9th of 86 rated pharmaceutical


Job description

At Gilead, we're creating a healthier world for all people. For more than 35 years, we've tackled diseases such as HIV, viral hepatitis, COVID-19 and cancer - working relentlessly to develop therapies that help improve lives and to ensure access to these therapies across the globe. We continue to fight against the world's biggest health challenges, and our mission requires collaboration, determination and a relentless drive to make a difference.

Every member of Gilead's team plays a critical role in the discovery and development of life-changing scientific innovations. Our employees are our greatest asset as we work to achieve our bold ambitions, and we're looking for the next wave of passionate and ambitious people ready to make a direct impact.

We believe every employee deserves a great leader. People Leaders are the cornerstone to the employee experience at Gilead and Kite. As a people leader now or in the future, you are the key driver in evolving our culture and creating an environment where every employee feels included, developed and empowered to fulfil their aspirations. Join Gilead and help create possible, together.
Job Description

The Inflammation Biology group is seeking a passionate and driven postdoctoral scientist to pursue innovative research at the forefront of chronic fibrotic liver disease. This role offers a unique opportunity to explore the complex biology of conditions such as metabolic dysfunction-associated steatohepatitis (MASH), primary biliary cholangitis (PBC), and primary sclerosing cholangitis (PSC).

The successful candidate will spearhead an independent research project focused on uncovering novel pathogenic mechanisms and identifying therapeutic targets in chronic fibrotic diseases. This work is expected to yield impactful insights into the pathogenesis of human disease and high-impact publications in leading scientific journals.

This is a three-year postdoctoral training position at Gilead. The role is embedded in a highly collaborative and resource-rich environment, offering access to world-class facilities and cross-functional expertise across Gilead's research ecosystem.

Responsibilities:

  • The successful candidate will lead independent research projects to investigate pathogenic mechanisms in chronic fibrotic liver disease
  • They will utilize Gilead's expensive single cell and spatial transcriptomic datasets as well as clinical datasets to uncover novel mechanisms driving fibrotic niche expansion
  • The candidate will use a combination of mouse genetic and pharmacology approaches to investigate key disease drivers and establish novel ex vivo models allowing for target identification and screening
  • With the support of a mentor, the postdoctoral scientist will design, conduct, and analyze in vitro and in vivo experiments to drive research towards publication in a top-tier journal.

The postdoctoral scientist will be expected to publish their work in top-tier journals and present at scientific conferences. The selected candidate will work in a highly collaborative environment at Gilead through a three-year fixed term, with access to world-class research facilities and the opportunity to leverage expertise and resources across multiple functional areas.

Basic Qualifications:

  • Ph.D. in biochemistry, molecular biology, immunology or related discipline.
  • At least one first author paper published or accepted in a peer-reviewed journal.
  • Proficiency in mammalian cell biology and biochemistry techniques.
  • Excellent written, verbal, and interpersonal communication skills and strong organizational skills are required.

Preferred Qualifications:

  • Preference will be given to candidates with broad hands-on expertise in cell biology, molecular biology, biochemistry and imaging techniques including in vitro cell-based functional assays, primary cell cultures, transfection/transduction techniques, CRISPR/Cas9, microscopy, flow cytometry, and other immunoassays.
  • Hands-on experience with mouse models of disease, mouse handling, in-life procedures and tissue harvesting are preferred.
  • Familiarity with the analysis of large-scale multiomic datasets, such as single-cell and spatial transcriptomics, is preferred.
  • Experience developing complex primary cell co-culture systems is an advantage.
  • The individual should have demonstrable skills and experience in leading focused hypothesis-driven biological research, as exemplified by quality publications.
  • The successful candidate must have demonstrated success in working in a cross-functional and highly collaborative team environment, and must be able to communicate clearly and effectively, both verbally and in writing, to a variety of audiences.


The salary range for this position is: $126,820.00 - $164,120.00. Gilead considers a variety of factors when determining base compensation, including experience, qualifications, and geographic location. These considerations mean actual compensation will vary. This position may be eligible for paid time off and a benefits package. Benefits MAY include company-sponsored medical, dental, vision, and life insurance plans*. This position is not eligible for a discretionary annual bonus or discretionary stock-based long-term incentives.

For additional benefits information, visit:

https://www.gilead.com/careers/compensation-benefits-and-wellbeing

* Eligible employees may participate in benefit plans, subject to the terms and conditions of the applicable plans.


For jobs in the United States:

Gilead Sciences Inc. is committed to providing equal employment opportunities to all employees and applicants for employment, and is dedicated to fostering an inclusive work environment comprised of diverse perspectives, backgrounds, and experiences. Employment decisions regarding recruitment and selection will be made without discrimination based on race, color, religion, national origin, sex, age, sexual orientation, physical or mental disability,genetic information or characteristic, gender identity and expression, veteran status, or other non-job related characteristics or other prohibited grounds specified in applicable federal, state and local laws. In order to ensure reasonable accommodation for individuals protected by Section 503 of the Rehabilitation Act of 1973, the Vietnam Era Veterans' Readjustment Act of 1974, and Title I of the Americans with Disabilities Act of 1990, applicants who require accommodation in the job application process may contact ApplicantAccommodations@gilead.comfor assistance.


For more information about equal employment opportunity protections, please view the'Know Your Rights' poster.

NOTICE: EMPLOYEE POLYGRAPH PROTECTION ACT
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Gilead Sciences will not discharge or in any other manner discriminate against employees or applicants because they have inquired about, discussed, or disclosed their own pay or the pay of another employee or applicant. However, employees who have access to the compensation information of other employees or applicants as a part of their essential job functions cannot disclose the pay of other employees or applicants to individuals who do not otherwise have access to compensation information, unless the disclosure is (a) in response to a formal complaint or charge, (b) in furtherance of an investigation, proceeding, hearing, or action, including an investigation conducted by the employer, (c) consistent with the legal duty to furnish information; or (d) otherwise protected by law.
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