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Spatial Transcriptomics Jobs in San Diego, CA (NOW HIRING)

... transcriptomics, proteomics and fluorescent H&E in tissue, with spatial context. Singular Genomics' mission is to empower researchers and clinicians to advance science and medicine. We foster a ...

... transcriptomics, proteomics and fluorescent H&E in tissue, with spatial context. Singular Genomics' mission is to empower researchers and clinicians to advance science and medicine. We foster a ...

Director

San Diego, CA · On-site

$227 - $276/hr

Target identification using genomics, transcriptomics, proteomics, spatial biology, and literature mining. * Target validation using in vitro and in vivo pharmacology. * Development of biochemical ...

Target identification using genomics, transcriptomics, proteomics, spatial biology, and literature mining. * Target validation using in vitro and in vivo pharmacology. * Development of biochemical ...

Showing results 21-33

Spatial Transcriptomics information

See San Diego, CA salary details

$52K

$216K

$424.7K

How much do spatial transcriptomics jobs pay per year?

As of Aug 15, 2026, the average yearly pay for spatial transcriptomics in San Diego, CA is $216,024.00, according to ZipRecruiter salary data. Most workers in this role earn between $83,300.00 and $424,700.00 per year, depending on experience, location, and employer.

What is spatial transcriptomics?

Spatial transcriptomics is an advanced technique that allows scientists to measure gene expression within the spatial context of tissue samples. Unlike traditional RNA sequencing, which loses information about where each gene is expressed, spatial transcriptomics preserves the physical location of gene activity in tissues. This helps researchers better understand how cells function within their native environments and interact with neighboring cells, which is especially valuable in fields like cancer research, neuroscience, and developmental biology. The method combines microscopy, molecular biology, and computational analysis to produce detailed maps of gene expression.

What are some common challenges faced by professionals working in spatial transcriptomics, and how can they be addressed?

Professionals in spatial transcriptomics often encounter challenges related to handling large, complex datasets and integrating spatial information with gene expression data. Ensuring high-quality sample preparation and mastering advanced imaging or sequencing technologies are also frequent hurdles. These challenges can be addressed by collaborating closely with multidisciplinary teams—including bioinformaticians, molecular biologists, and imaging specialists—and staying up-to-date with the latest software tools and protocols. Continuous learning and effective communication within the team are key to overcoming technical and analytical obstacles in this rapidly evolving field.

What are the key skills and qualifications needed to thrive as a spatial transcriptomics scientist?

To thrive as a Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree in a life science field. Familiarity with spatial transcriptomics platforms (such as 10x Genomics Visium), next-generation sequencing (NGS) technologies, and data analysis tools like R or Python is essential. Strong problem-solving skills, attention to detail, and effective communication are important soft skills for collaborating on interdisciplinary research projects. These skills and qualities are crucial for generating high-quality spatial gene expression data and translating findings into meaningful biological insights.

What are popular job titles related to Spatial Transcriptomics jobs in San Diego, CA?

For Spatial Transcriptomics jobs in San Diego, CA, the most frequently searched job titles are:

What job categories do people searching Spatial Transcriptomics jobs in San Diego, CA look for?

The top searched job categories for Spatial Transcriptomics jobs in San Diego, CA are:

What cities near San Diego, CA are hiring for Spatial Transcriptomics jobs?

Cities near San Diego, CA with the most Spatial Transcriptomics job openings:

Infographic showing various Spatial Transcriptomics job openings in San Diego, CA as of August 2026, with employment types broken down into 100% Full Time. Highlights an 50% In-person, 17% Hybrid, and 33% Remote job distribution, with an average salary of $216,024 per year, or $103.9 per hour.

Manufacturing Associate 2

Singular Genomics Systems INC.

San Diego, CA • On-site

Full-time

Re-posted 9 days ago


Job description

Description

 ABOUT SINGULAR GENOMICS


Singular Genomics is inventing at the forefront of genomics, one of the world's fastest-growing industries. The commercially available G4 Sequencing Platform is a powerful, highly versatile benchtop genomic sequencer designed to produce fast and accurate results. In addition, the company is currently developing the G4X Spatial Sequencer, an upgrade to the G4, which will leverage Singular's proprietary sequencing technology, applying it as an in situ readout for transcriptomics, proteomics and fluorescent H&E in tissue, with spatial context. Singular Genomics' mission is to empower researchers and clinicians to advance science and medicine.

We foster a culture of creativity and technical excellence, both catalysts for innovation. We celebrate diversity, emphasize collaboration and, as we rapidly mature, we are constantly looking at ways we can do better for our people.


Our Headquarters are located on the Torrey Pines Mesa, in La Jolla, California at the center of the biotech hub. Our Manufacturing facility is in Sorrento Valley.

Position Summary:


As a Manufacturing Associate 2 on the chemistry team, you will be responsible for production of dye labeled NTPs, and other organic compounds, used in Singular's NGS and Spatial technologies. We are seeking a self-driven individual who enjoys a unique opportunity to both routine work and help create manufacturing processes from ground up.


Responsibilities:


Manufacture chemical compounds (nucleotides, linkers, triphosphates) using established synthesis schemes

Document manufacture process on approved batch records, following good documentation practices

Submit samples to internal and external QC departments

Physically store inventory in lab at 4C, -20C, and -80C storage conditions

Work with manager and supply chain team to maintain adequate supply of raw materials

Maintain laboratory instrumentation with the help of approved service contractors

           -LC-MS

           -HPLC (preparative and analytical)

           -Rotary evaporators

           -UV-Vis Spectrophotometers

Work with facilities to address any safety issues in the lab

Comfortable doing routine tasks with maximum precision and accountability.  

Maintain excellent record keeping. Able to execute and improve batch records and SOPs.  

Maintain lab and all documentation in line with a cGMP and cGDP production environment.  

Maintain inventory of reagents, chemicals, and supplies.  

Assist in day-to-day setup and running of lab operations. Maintain lab in accordance with all EH&S programs. Keep equipment operational by following protocols/SOPs. 

Operates in fast-paced environment with rapidly shifting priorities. 

Able to work while wearing full personal protective equipment (PPE) for the whole shift. 


Qualifications: 


Bachelor of Science degree in a scientific field preferred.    

At least 3-5 years manufacturing organic compounds in a GMP environment

Experience with reverse phase, normal phase, and anion exchange chromatography

GDP, GLP, GMP experience

Familiar with 5S and other lean six sigma principles.


The estimated base salary range for this role based in the United States of America is: $68,640 - $86,400.  Additionally, this role is eligible for to receive equity as part of the compensation package. Compensation decisions are dependent on several factors including, but not limited to, an individual's qualifications, location where the role is to be performed, internal equity, and alignment with market data. Should the level of the role change during the hiring process, the applicable salary range may be updated accordingly.


Singular Genomics is an equal opportunity employer. We celebrate diversity and are committed to creating an inclusive environment for all employees.

Singular Genomics is committed to working with and providing reasonable accommodations to job applicants with physical or mental disabilities. Applicants with a disability who require a reasonable accommodation for any part of the application or hiring process can provide their name and contact information to our Accommodations team at accommodationsrequest@singulargenomics.com. Your request will be responded to as soon as possible.