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Spatial Transcriptomics Jobs in Rochester, MN (NOW HIRING)

Spatial Transcriptomics information

See Rochester, MN salary details

$49.8K

$206.8K

$406.6K

How much do spatial transcriptomics jobs pay per year?

As of Jul 15, 2026, the average yearly pay for spatial transcriptomics in Rochester, MN is $206,824.00, according to ZipRecruiter salary data. Most workers in this role earn between $79,800.00 and $406,600.00 per year, depending on experience, location, and employer.

What is spatial transcriptomics?

Spatial transcriptomics is an advanced technique that allows scientists to measure gene expression within the spatial context of tissue samples. Unlike traditional RNA sequencing, which loses information about where each gene is expressed, spatial transcriptomics preserves the physical location of gene activity in tissues. This helps researchers better understand how cells function within their native environments and interact with neighboring cells, which is especially valuable in fields like cancer research, neuroscience, and developmental biology. The method combines microscopy, molecular biology, and computational analysis to produce detailed maps of gene expression.

What are some common challenges faced by professionals working in spatial transcriptomics, and how can they be addressed?

Professionals in spatial transcriptomics often encounter challenges related to handling large, complex datasets and integrating spatial information with gene expression data. Ensuring high-quality sample preparation and mastering advanced imaging or sequencing technologies are also frequent hurdles. These challenges can be addressed by collaborating closely with multidisciplinary teams—including bioinformaticians, molecular biologists, and imaging specialists—and staying up-to-date with the latest software tools and protocols. Continuous learning and effective communication within the team are key to overcoming technical and analytical obstacles in this rapidly evolving field.

What are the key skills and qualifications needed to thrive as a Spatial Transcriptomics Scientist, and why are they important?

To thrive as a Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree in a life science field. Familiarity with spatial transcriptomics platforms (such as 10x Genomics Visium), next-generation sequencing (NGS) technologies, and data analysis tools like R or Python is essential. Strong problem-solving skills, attention to detail, and effective communication are important soft skills for collaborating on interdisciplinary research projects. These skills and qualities are crucial for generating high-quality spatial gene expression data and translating findings into meaningful biological insights.
What are popular job titles related to Spatial Transcriptomics jobs in Rochester, MN? For Spatial Transcriptomics jobs in Rochester, MN, the most frequently searched job titles are:
What job categories do people searching Spatial Transcriptomics jobs in Rochester, MN look for? The top searched job categories for Spatial Transcriptomics jobs in Rochester, MN are:
What cities near Rochester, MN are hiring for Spatial Transcriptomics jobs? Cities near Rochester, MN with the most Spatial Transcriptomics job openings:
Infographic showing various Spatial Transcriptomics job openings in Rochester, MN as of July 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $206,824 per year, or $99.4 per hour.
Research Fellow - Gut Microbiome Lab

Research Fellow - Gut Microbiome Lab

Mayo Clinic

Rochester, MN • On-site

$67K - $78K/yr

Full-time

Medical, Dental, Vision, Retirement

Re-posted 5 days ago


Mayo Clinic rating

7.8

Company rating: 7.8 out of 10

Based on 688 frontline employees who took The Breakroom Quiz

106th of 885 rated healthcare providers


Job description

Why Mayo Clinic

Mayo Clinic is top-ranked in more specialties than any other care provider according to U.S. News & World Report. As we work together to put the needs of the patient first, we are also dedicated to our employees, investing in competitive compensation and comprehensive benefit plans - to take care of you and your family, now and in the future. And with continuing education and advancement opportunities at every turn, you can build a long, successful career with Mayo Clinic.

Benefits Highlights
  • Medical: Multiple plan options.
  • Dental: Delta Dental or reimbursement account for flexible coverage.
  • Vision: Affordable plan with national network.
  • Pre-Tax Savings: HSA and FSAs for eligible expenses.
  • Retirement: Competitive retirement package to secure your future.

Responsibilities

The Gut Microbiome Laboratory, housed within the Enteric Neurosciences Program at Mayo Clinic (Rochester, MN), is seeking a highly motivated, self-driven postdoctoral fellow to join a collaborative and translational research team focused on defining pathophysiological mechanisms underlying gastrointestinal motility disorders.

Our program represents one of the largest and most integrated groups of physicians and scientists studying the enteric nervous system and gastrointestinal physiology, with a long history of paradigm-shifting discoveries that have shaped the field. We are seeking new team members who are excited to contribute to, and extend, this distinguished tradition.

The laboratory is at the forefront of research in human neurogastrointestinal disorders, including irritable bowel syndrome (IBS). We employ an integrated experimental approach that combines physiology, advanced imaging, molecular and cellular biology, and in vivo animal models to interrogate gut-microbe-host interactions. Our work is published in high-impact journals (Gastroenterology, Cell, Cell Host & Microbe, and Science Translational Medicine) and is supported by NIH funding.

We provide extensive resources, mentorship, and a highly collaborative environment to support trainees as they advance to the next stages of their careers. We are committed to fostering a diverse, inclusive, and supportive culture, and we value community, celebrating milestones together, and creating space to recognize both scientific accomplishments and the people behind them.


Qualifications

Qualified candidates should hold a PhD or MD/PhD in physiology, neuroscience, molecular biology, or a related discipline and be within five years of PhD completion. This position is not intended for clinical training and is not open to MD/MBBS candidates seeking clinical roles.

Experience in advanced imaging, single-cell or spatial transcriptomics, and mouse physiological studies is highly desirable, and candidates with expertise in these areas are strongly encouraged to apply.


Exemption Status
Exempt
Compensation Detail
$67,282.95 - $78,711.15 / year; Education, experience and tenure may be considered along with internal equity when job offers are extended.
Benefits Eligible
Yes
Schedule
Full Time
Hours/Pay Period
80
Schedule Details
Monday - Friday typically 8 hour days
Weekend Schedule
as needed
International Assignment
No
Site Description
Just as our reputation has spread beyond our Minnesota roots, so have our locations. Today, our employees are located at our three major campuses in Phoenix/Scottsdale, Arizona, Jacksonville, Florida, Rochester, Minnesota, and at Mayo Clinic Health System campuses throughout Midwestern communities, and at our international locations. Each Mayo Clinic location is a special place where our employees thrive in both their work and personal lives. Learn more about what each unique Mayo Clinic campus has to offer, and where your best fit is. 

Equal Opportunity

All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, gender identity, sexual orientation, national origin, protected veteran status or disability status. Learn more about the 'EOE is the Law'.  Mayo Clinic participates in E-Verify and may provide the Social Security Administration and, if necessary, the Department of Homeland Security with information from each new employee's Form I-9 to confirm work authorization.

Recruiter
Kara SchottQualifications:

Qualified candidates should hold a PhD or MD/PhD in physiology, neuroscience, molecular biology, or a related discipline and be within five years of PhD completion. This position is not intended for clinical training and is not open to MD/MBBS candidates seeking clinical roles.

Experience in advanced imaging, single-cell or spatial transcriptomics, and mouse physiological studies is highly desirable, and candidates with expertise in these areas are strongly encouraged to apply.


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About Mayo Clinic

Sourced by ZipRecruiter

Mayo Clinic is the largest integrated, not-for-profit medical group practice in the world. We're building the future, one where the best possible care is available to everyone — and more people can heal at home. Our relentless research turns into earlier diagnoses and new cures. That's how we inspire hope in those who need it most. At Mayo Clinic, experts work together to solve the most challenging unmet needs of patients. Our history of innovation dates back almost 150 years, when brothers Will and Charlie Mayo pioneered an integrated, team-based approach to medicine. Today, that trailblazing spirit drives innovations like Mayo Clinic Platform — which powers new technologies to change how care is delivered to all.

Industry

Hospitals

Company size

10,000+ Employees

Headquarters location

Rochester, MN, US

Year founded

1919