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Spatial Transcriptomics Jobs in Los Angeles, CA (NOW HIRING)

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Spatial Transcriptomics information

See Los Angeles, CA salary details

$52.8K

$219.2K

$431K

How much do spatial transcriptomics jobs pay per year?

As of Sep 5, 2026, the average yearly pay for spatial transcriptomics in Los Angeles, CA is $219,239.00, according to ZipRecruiter salary data. Most workers in this role earn between $84,600.00 and $431,000.00 per year, depending on experience, location, and employer.

What is spatial transcriptomics?

Spatial transcriptomics is an advanced technique that allows scientists to measure gene expression within the spatial context of tissue samples. Unlike traditional RNA sequencing, which loses information about where each gene is expressed, spatial transcriptomics preserves the physical location of gene activity in tissues. This helps researchers better understand how cells function within their native environments and interact with neighboring cells, which is especially valuable in fields like cancer research, neuroscience, and developmental biology. The method combines microscopy, molecular biology, and computational analysis to produce detailed maps of gene expression.

What are the key skills and qualifications needed to thrive as a spatial transcriptomics scientist?

To thrive as a Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree in a life science field. Familiarity with spatial transcriptomics platforms (such as 10x Genomics Visium), next-generation sequencing (NGS) technologies, and data analysis tools like R or Python is essential. Strong problem-solving skills, attention to detail, and effective communication are important soft skills for collaborating on interdisciplinary research projects. These skills and qualities are crucial for generating high-quality spatial gene expression data and translating findings into meaningful biological insights.

What are some common challenges faced by professionals working in spatial transcriptomics, and how can they be addressed?

Professionals in spatial transcriptomics often encounter challenges related to handling large, complex datasets and integrating spatial information with gene expression data. Ensuring high-quality sample preparation and mastering advanced imaging or sequencing technologies are also frequent hurdles. These challenges can be addressed by collaborating closely with multidisciplinary teams—including bioinformaticians, molecular biologists, and imaging specialists—and staying up-to-date with the latest software tools and protocols. Continuous learning and effective communication within the team are key to overcoming technical and analytical obstacles in this rapidly evolving field.

What are popular job titles related to Spatial Transcriptomics jobs in Los Angeles, CA?

For Spatial Transcriptomics jobs in Los Angeles, CA, the most frequently searched job titles are:

What job categories do people searching Spatial Transcriptomics jobs in Los Angeles, CA look for?

The top searched job categories for Spatial Transcriptomics jobs in Los Angeles, CA are:

What cities near Los Angeles, CA are hiring for Spatial Transcriptomics jobs?

Cities near Los Angeles, CA with the most Spatial Transcriptomics job openings:

Infographic showing various Spatial Transcriptomics job openings in Los Angeles, CA as of August 2026, with employment types broken down into 100% Full Time. Highlights an 89% In-person, and 11% Remote job distribution, with an average salary of $219,239 per year, or $105.4 per hour.

$92K - $95K/yr

Full-time

Re-posted 23 days ago


University Of Southern California rating

8.4

Company rating: 8.4 out of 10

Based on 53 frontline employees who took The Breakroom Quiz

102nd of 630 rated colleges and universities


Job description

The USC Mark and Mary Stevens Neuroimaging and Informatics Institute and Center for Integrative Connectomics (CIC, http://cic.ini.usc.edu ) are world
leaders in the development of advanced computational and scientific
approaches for the comprehensive mapping of brain structure and function. The CIC's unique multidisciplinary environment and cutting-edge resources allow for integration of spatial transcriptomics and connectomics datasets for research questions focused on neuronal cell type vulnerability in neurobiological disease.
The CIC is recruiting a talented full-time Research Engineer to help with various
projects on the computational analysis of high resolution 3D microscopy
datasets. Under the supervision of the PI, the candidate will assist with data processing, analyzing the data, applying machine learning/AI for image pipeline development, data visualization for interpretability of the models, and submit abstracts and papers to conferences and journal publications.
Designs, develops, and tests materials and prototypes for research projects.
Investigates the feasibility of applying specific scientific principles and
concepts to potential inventions and projects. Analyzes and presents data as appropriate and makes decisions to further the goals of the experiment. The candidate is expected to provide thorough documentation of methods publicly on GitHub and be comfortable training coworkers in the methodologies.
Required Qualifications:
• Master's Degree in Biomedical Engineering/Computer Science/Neuroimaging
• Strong understanding of machine learning, deep learning for biomedical
imaging, computer vision, AI and integration of neuronal morphology methods, statistics and image analysis.
• Experience working with large-scale neuroimaging and genetics data.
• Proficiency in oral and written communication as determined by contributions to scientific conferences and related presentations.
• Experience in designing, developing and maintaining pipelines/tools using
machine learning and deep learning for neuroimaging applications.
• Knowledge about data visualization and various data analytics tools and libraries.
The annual base salary range for this position is $92,211.99 - $95,000. When
extending an offer of employment, the University of Southern California considers factors such as (but not limited to) the scope and responsibilities of the position, the candidate's work experience, education/training, key skills, internal peer equity, federal, state, and local laws, contractual stipulations, grant funding, as well as external market and organizational considerations.
Minimum Education: Master's degree in Computer Science, Engineering or in
related field(s) Minimum Experience: 3 years Minimum Skills: Experience in a laboratory setting conducting scientific research. Excellent written and oral communication skills. Ability to communicate technical information to
non-technical audiences.
Preferred Education: Doctorate Preferred Experience: 5 years Preferred Skills: Proven experience achieving results in a scientific research environment. Deep knowledge base in specific field.
Minimum Education: Master's degree In Engineering Or in related field(s)
Minimum Experience: 3 years
Minimum Skills: Experience in a laboratory setting conducting scientific research. Excellent written and oral communication skills. Ability to communicate technical information to non-technical audiences.
Preferred Education: Doctorate
Preferred Experience: 5 years
Preferred Skills: Proven experience achieving results in a scientific research environment. Deep knowledge base in specific field.
USC is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, protected veteran status, disability, or any other characteristic protected by law or USC policy. USC observes affirmative action obligations consistent with state and federal law. USC will consider for employment all qualified applicants with criminal records in a manner consistent with applicable laws and regulations, including the Los Angeles County Fair Chance Ordinance for employers and the Fair Chance Initiative for Hiring Ordinance, and with due consideration for patient and student safety. Please refer to the Background Screening Policy Appendix D for specific employment screen implications for the position for which you are applying.
We provide reasonable accommodations to applicants and employees with disabilities. Applicants with questions about access or requiring a reasonable accommodation for any part of the application or hiring process should contact USC Human Resources by phone at (213) 821-8100, or by email at uschr@usc.edu. Inquiries will be treated as confidential to the extent permitted by law.
  • Notice of Non-discrimination
  • Employment Equity
  • Read USC's Clery Act Annual Security Report
  • USC is a smoke-free environment
  • Digital Accessibility

If you are a current USC employee, please apply to this USC job posting in Workday by copying and pasting this link into your browser:
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About University of Southern California

Sourced by ZipRecruiter

The University of Southern California (USC) is not a conventional company, but a private research university established in the heart of Los Angeles, CA, US. Founded in 1880, it's one of the oldest private research universities in California. USC operates in the education industry providing primary services of higher education, research, and community development. This prestigious institution offers a comprehensive array of undergraduate, graduate, and professional programs across various disciplines, including the humanities, social sciences, and STEM (Science, Technology, Engineering, and Mathematics). The University is guided by its commitment to foster creativity, innovation, leadership, and discovery through academic excellence.

Industry

Colleges, universities, and professional schools

Company size

10,000+ Employees

Headquarters location

Los Angeles , CA, US

Year founded

1880