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Single Cell Spatial Transcriptomics Jobs in Baltimore, MD

Senior Scientist

Baltimore, MD · On-site

$90K - $124K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

Support the planning, execution, troubleshooting, and analysis of single-cell and spatial transcriptomics experiments utilizing platforms such as Chromium X and CytAssist. * Acquire, maintain, and ...

Senior Scientist

Baltimore, MD · On-site

$90K - $124K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

Support the planning, execution, troubleshooting, and analysis of single-cell and spatial transcriptomics experiments utilizing platforms such as Chromium X and CytAssist. * Acquire, maintain, and ...

Postdoctoral Fellow

Baltimore, MD · On-site

$48K - $66K/yr

Familiarity with induced pluripotent stem cells (iPSCs), cardiovascular physiology, and single-cell/spatial omics. The Cho Lab is part of the Institute for NanoBioTechnology (INBT), home to a vibrant ...

Single Cell Spatial Transcriptomics information

See Baltimore, MD salary details

$12

$21

$29

How much do single cell spatial transcriptomics jobs pay per hour?

As of Aug 19, 2026, the average hourly pay for single cell spatial transcriptomics in Baltimore, MD is $21.51, according to ZipRecruiter salary data. Most workers in this role earn between $16.73 and $26.97 per hour, depending on experience, location, and employer.

What is single cell spatial transcriptomics?

Single cell spatial transcriptomics is a cutting-edge technique that allows researchers to analyze gene expression in individual cells while preserving their spatial location within a tissue. This method combines the high-resolution insights of single-cell RNA sequencing with spatial information, enabling scientists to understand how cells interact and organize within their native environments. It is widely used in biomedical research to study tissue architecture, disease mechanisms, and cellular heterogeneity.

What are the typical challenges faced by professionals working in single cell spatial transcriptomics, and how can they be addressed?

Professionals in Single Cell Spatial Transcriptomics often encounter challenges related to handling large, complex data sets and integrating spatial information with single-cell transcriptomic profiles. These tasks demand strong computational skills and close collaboration with bioinformaticians and other researchers. Effective communication within interdisciplinary teams is essential to ensure experimental design aligns with downstream analysis needs. Staying updated with rapidly evolving technologies and best practices also helps professionals overcome technical hurdles and produce reliable, high-impact results.

What are the key skills and qualifications needed to thrive as a single cell spatial transcriptomics scientist, and why are they important?

To thrive as a Single Cell Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree (PhD or MSc) in a relevant field. Familiarity with high-throughput sequencing platforms, spatial transcriptomics technologies (like 10x Genomics Visium or NanoString GeoMx), and data analysis tools such as R or Python is essential. Critical thinking, problem-solving, and effective communication are crucial soft skills for interpreting complex data and collaborating in multidisciplinary teams. These skills and qualities are vital for generating reliable insights into cellular function and spatial organization, which drive innovative research and discovery.

What are popular job titles related to Single Cell Spatial Transcriptomics jobs in Baltimore, MD?

For Single Cell Spatial Transcriptomics jobs in Baltimore, MD, the most frequently searched job titles are:

What cities near Baltimore, MD are hiring for Single Cell Spatial Transcriptomics jobs?

Cities near Baltimore, MD with the most Single Cell Spatial Transcriptomics job openings:

Infographic showing various Single Cell Spatial Transcriptomics job openings in Baltimore, MD as of August 2026, with employment types broken down into 1% Locum Tenens, 1% As Needed, 77% Full Time, 17% Part Time, and 4% Contract. Highlights an 92% Physical, 2% Hybrid, and 6% Remote job distribution, with an average salary of $44,735 per year, or $21.5 per hour.

Senior Scientist

Guidehouse

Baltimore, MD • On-site

$90K - $124K/yr

Full-time

Medical, Dental, Vision, Life, Retirement

Posted 11 days ago


Guidehouse rating

8.0

Company rating: 8.0 out of 10

Based on 28 frontline employees who took The Breakroom Quiz

33rd of 72 rated business consultants


Job description

Job Family:

Scientist


Travel Required:

None


Clearance Required:

Ability to Obtain Public Trust

What You Will Do:

We are looking for a Senior Scientist to support the operational and research objectives of the National Institute on Aging (NIA) Intramural Research Program by supporting genomic, genetics, single-cell sequencing, and spatial transcriptomics research activities. This is a full-time position located in Baltimore, MD.

  • Provide on-site scientific expertise, laboratory support, and data analysis support for genomic and genetics experiments conducted by NIA research staff.

  • Organize, validate, and process samples for microarray, next-generation sequencing, spatial transcriptomics, and single-cell sequencing experiments.

  • Use advanced scientific knowledge and laboratory skills to resolve complex genetics and genomics issues, provide experimental guidance, and conduct pilot studies to develop and improve laboratory techniques.

  • Maintain an accurate inventory of samples, reagents, and consumables through tracking systems and databases; obtain vendor quotes and assist with purchasing requests for laboratory supplies, services, and equipment.

  • Perform operational troubleshooting, calibration, software updates, and maintenance of specialized laboratory instruments while ensuring compliance with laboratory safety procedures.

  • Support the planning, execution, troubleshooting, and analysis of single-cell and spatial transcriptomics experiments utilizing platforms such as Chromium X and CytAssist.

  • Acquire, maintain, and support specialized laboratory instrumentation and evaluate emerging technologies, software, and methodologies for potential implementation.

  • Design and conduct complex scientific experiments requiring broad knowledge of molecular biology, genomics, transcriptomics, and related scientific principles.

  • Provide technical support and scientific guidance to laboratory staff on research projects, experimental design, assay development, and data interpretation.

  • Establish, train users on, and help manage Laboratory Information Management Systems (LIMS) and Electronic Laboratory Notebooks (ELN).

  • Maintain, calibrate, troubleshoot, and train staff on laboratory instrumentation, equipment, and associated software applications.

  • Manage scientific resources, including reagents, frozen cell stocks, biological samples, and research inventories.

  • Conduct bioinformatics and statistical analyses and prepare data for abstracts, scientific reports, manuscripts, and presentations.

  • Maintain accurate and detailed electronic laboratory notebooks and research documentation.

  • Collaborate with Principal Investigators and research staff to prioritize instrument usage and optimize laboratory operations.

  • Coordinate with IT personnel regarding software, data management, instrument connectivity, and technology-related issues.

  • Prepare technical reports, manuscripts, abstracts, posters, oral presentations, and other scientific communications.

  • Present research findings at laboratory meetings, scientific conferences, symposia, and national scientific meetings.

  • Support data management and sharing initiatives, including organizing and uploading datasets to repositories such as GEO, SRA, and MassIVE.

  • Provide mentoring, training, and technical guidance to fellows, postdoctoral researchers, students, biologists, and junior scientists.

  • Support scientific collaborations, grant-related activities, laboratory organization initiatives, and research program development.

  • Provide scientific guidance to management and laboratory leadership through literature reviews, technical evaluations, and recommendations for research activities and equipment purchases.

  • Incumbent capture, no other candidates were considered due to incumbent candidate identified. They meet the labor category requirements provided by the customer.

What You Will Need:

  • Ph.D. in Neuroscience, Biology, or a related scientific field.

  • Minimum of EIGHT (8) years of experience in genomics, genetics, molecular biology, and transcriptomics research.

  • Hands-on background supporting single-cell sequencing and spatial transcriptomics workflows.

  • Skilled in operating, maintaining, and troubleshooting specialized scientific instrumentation.

  • Background conducting bioinformatics and statistical analyses of genomic and transcriptomic datasets.

  • Proven ability to prepare scientific manuscripts, technical reports, presentations, and publication-quality figures.

  • Knowledge of laboratory inventory management, research documentation, and electronic records.

  • Proficiency with Microsoft Office Suite.

  • Ability to train, mentor, and support researchers and laboratory personnel.

  • Ability to maintain detailed electronic laboratory notebooks and research records.

  • Must be able to obtain and maintain a Federal or DoD "public trust"; candidates must receive approved adjudication prior to onboarding with Guidehouse. Candidates with an active public trust or suitability are preferred.

What Would Be Nice To Have:

  • Familiarity with OLINK Explore Protein Biomarker Discovery platforms.

  • Knowledge of 10X Genomics single-cell sequencing technologies.

  • Strong oral and written communication skills.

  • Collaborative approach to working with multidisciplinary research teams.

  • Background supporting shared scientific core facilities or advanced research laboratories.

  • Ability to implement or administer Laboratory Information Management Systems (LIMS).

  • Skilled in managing scientific datasets and submissions to public repositories such as GEO, SRA, and MassIVE.

  • Exposure to Data Management and Sharing (DMS) initiatives.

  • Record of peer-reviewed publications and scientific presentations.

  • Mentoring background with fellows, postdoctoral researchers, students, or junior scientists.

  • Ability to evaluate and implement emerging laboratory technologies and research methodologies.

The annual salary range for this position is $130,000.00-$216,000.00. Compensation decisions depend on a wide range of factors, including but not limited to skill sets, experience and training, security clearances, licensure and certifications, and other business and organizational needs.


What We Offer:

Guidehouse offers a comprehensive, total rewards package that includes competitive compensation and a flexible benefits package that reflects our commitment to creating a diverse and supportive workplace.

Benefits include:

  • Medical, Rx, Dental & Vision Insurance

  • Personal and Family Sick Time & Company Paid Holidays

  • Parental Leave

  • 401(k) Retirement Plan

  • Group Term Life and Travel Assistance

  • Voluntary Life and AD&D Insurance

  • Health Savings Account, Health Care & Dependent Care Flexible Spending Accounts

  • Transit and Parking Commuter Benefits

  • Short-Term & Long-Term Disability

  • Tuition Reimbursement, Personal Development, Certifications & Learning Opportunities

  • Employee Referral Program

  • Corporate Sponsored Events & Community Outreach

  • Care.com annual membership

  • Employee Assistance Program

  • Supplemental Benefits via Corestream (Critical Care, Hospital Indemnity, Accident Insurance, Legal Assistance and ID theft protection, etc.)

  • Position may be eligible for a discretionary variable incentive bonus

About Guidehouse

Guidehouse is an Equal Opportunity Employer-Protected Veterans, Individuals with Disabilities or any other basis protected by law, ordinance, or regulation.

Guidehouse will consider for employment qualified applicants with criminal histories in a manner consistent with the requirements of applicable law or ordinance including the Fair Chance Ordinance of Los Angeles and San Francisco.

If you have visited our website for information about employment opportunities, or to apply for a position, and you require an accommodation, please contact Guidehouse Recruiting at 1-571-633-1711 or via email at RecruitingAccommodation@guidehouse.com. All information you provide will be kept confidential and will be used only to the extent required to provide needed reasonable accommodation.

All communication regarding recruitment for a Guidehouse position will be sent from Guidehouse email domains including @guidehouse.com or guidehouse@myworkday.com. Correspondence received by an applicant from any other domain should be considered unauthorized and will not be honored by Guidehouse. Note that Guidehouse will never charge a fee or require a money transfer at any stage of the recruitment process and does not collect fees from educational institutions for participation in a recruitment event. Never provide your banking information to a third party purporting to need that information to proceed in the hiring process.

If any person or organization demands money related to a job opportunity with Guidehouse, please report the matter to Guidehouse's Ethics Hotline. If you want to check the validity of correspondence you have received, please contact recruiting@guidehouse.com. Guidehouse is not responsible for losses incurred (monetary or otherwise) from an applicant's dealings with unauthorized third parties.

Guidehouse does not accept unsolicited resumes through or from search firms or staffing agencies. All unsolicited resumes will be considered the property of Guidehouse and Guidehouse will not be obligated to pay a placement fee.


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