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Single Cell Spatial Transcriptomics Jobs in Minnesota

... emerging single-cell/spatial multi-omics profiling technologies, to study gene regulation at the cellular and tissue level. Projects in our labs are funded through NIH grants and contracts. The ...

... emerging single-cell/spatial multi-omics profiling technologies, to study gene regulation at the cellular and tissue level. Projects in our labs are funded through NIH grants and contracts. The ...

... emerging single-cell/spatial multi-omics profiling technologies, to study gene regulation at the cellular and tissue level. Projects in our labs are funded through NIH grants and contracts. The ...

Research Fellow-Genomics

Rochester, MN · On-site

$64K - $74K/yr

... emerging single-cell/spatial multi-omics profiling technologies, to study gene regulation at the cellular and tissue level. Projects in our labs are funded through NIH grants and contracts. The ...

Single Cell Spatial Transcriptomics information

What are the key skills and qualifications needed to thrive as a Single Cell Spatial Transcriptomics Scientist, and why are they important?

To thrive as a Single Cell Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree (PhD or MSc) in a relevant field. Familiarity with high-throughput sequencing platforms, spatial transcriptomics technologies (like 10x Genomics Visium or NanoString GeoMx), and data analysis tools such as R or Python is essential. Critical thinking, problem-solving, and effective communication are crucial soft skills for interpreting complex data and collaborating in multidisciplinary teams. These skills and qualities are vital for generating reliable insights into cellular function and spatial organization, which drive innovative research and discovery.

What are some typical challenges faced by professionals working in Single Cell Spatial Transcriptomics, and how can they be addressed?

Professionals in Single Cell Spatial Transcriptomics often encounter challenges related to handling large, complex data sets and integrating spatial information with single-cell transcriptomic profiles. These tasks demand strong computational skills and close collaboration with bioinformaticians and other researchers. Effective communication within interdisciplinary teams is essential to ensure experimental design aligns with downstream analysis needs. Staying updated with rapidly evolving technologies and best practices also helps professionals overcome technical hurdles and produce reliable, high-impact results.

What is single cell spatial transcriptomics?

Single cell spatial transcriptomics is a cutting-edge technique that allows researchers to analyze gene expression in individual cells while preserving their spatial location within a tissue. This method combines the high-resolution insights of single-cell RNA sequencing with spatial information, enabling scientists to understand how cells interact and organize within their native environments. It is widely used in biomedical research to study tissue architecture, disease mechanisms, and cellular heterogeneity.
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What cities in Minnesota are hiring for Single Cell Spatial Transcriptomics jobs? Cities in Minnesota with the most Single Cell Spatial Transcriptomics job openings:
Infographic showing various Single Cell Spatial Transcriptomics job openings in Minnesota as of July 2026, with employment types broken down into 1% As Needed, 70% Full Time, 28% Part Time, and 1% Contract. Highlights an 94% Physical, 1% Hybrid, and 5% Remote job distribution.
Research Fellow - Gut Microbiome Lab

Research Fellow - Gut Microbiome Lab

Mayo Clinic

Rochester, MN

$67K - $78K/yr

Other

Medical, Dental, Vision, Retirement

Posted 7 days ago


Mayo Clinic rating

7.9

Company rating: 7.9 out of 10

Based on 689 frontline employees who took The Breakroom Quiz

105th of 886 rated healthcare providers


Job description

Why Mayo Clinic

Mayo Clinic is top-ranked in more specialties than any other care provider according to U.S. News & World Report. As we work together to put the needs of the patient first, we are also dedicated to our employees, investing in competitive compensation and comprehensive benefit plans - to take care of you and your family, now and in the future. And with continuing education and advancement opportunities at every turn, you can build a long, successful career with Mayo Clinic.

Benefits Highlights
  • Medical: Multiple plan options.
  • Dental: Delta Dental or reimbursement account for flexible coverage.
  • Vision: Affordable plan with national network.
  • Pre-Tax Savings: HSA and FSAs for eligible expenses.
  • Retirement: Competitive retirement package to secure your future.

Responsibilities

The Gut Microbiome Laboratory, housed within the Enteric Neurosciences Program at Mayo Clinic (Rochester, MN), is seeking a highly motivated, self-driven postdoctoral fellow to join a collaborative and translational research team focused on defining pathophysiological mechanisms underlying gastrointestinal motility disorders.

Our program represents one of the largest and most integrated groups of physicians and scientists studying the enteric nervous system and gastrointestinal physiology, with a long history of paradigm-shifting discoveries that have shaped the field. We are seeking new team members who are excited to contribute to, and extend, this distinguished tradition.

The laboratory is at the forefront of research in human neurogastrointestinal disorders, including irritable bowel syndrome (IBS). We employ an integrated experimental approach that combines physiology, advanced imaging, molecular and cellular biology, and in vivo animal models to interrogate gut-microbe-host interactions. Our work is published in high-impact journals (Gastroenterology, Cell, Cell Host & Microbe, and Science Translational Medicine) and is supported by NIH funding.

We provide extensive resources, mentorship, and a highly collaborative environment to support trainees as they advance to the next stages of their careers. We are committed to fostering a diverse, inclusive, and supportive culture, and we value community, celebrating milestones together, and creating space to recognize both scientific accomplishments and the people behind them.


Qualifications

Qualified candidates should hold a PhD or MD/PhD in physiology, neuroscience, molecular biology, or a related discipline and be within five years of PhD completion. This position is not intended for clinical training and is not open to MD/MBBS candidates seeking clinical roles.

Experience in advanced imaging, single-cell or spatial transcriptomics, and mouse physiological studies is highly desirable, and candidates with expertise in these areas are strongly encouraged to apply.


Exemption Status
Exempt
Compensation Detail
$67,282.95 - $78,711.15 / year; Education, experience and tenure may be considered along with internal equity when job offers are extended.
Benefits Eligible
Yes
Schedule
Full Time
Hours/Pay Period
80
Schedule Details
Monday - Friday typically 8 hour days
Weekend Schedule
as needed
International Assignment
No
Site Description
Just as our reputation has spread beyond our Minnesota roots, so have our locations. Today, our employees are located at our three major campuses in Phoenix/Scottsdale, Arizona, Jacksonville, Florida, Rochester, Minnesota, and at Mayo Clinic Health System campuses throughout Midwestern communities, and at our international locations. Each Mayo Clinic location is a special place where our employees thrive in both their work and personal lives. Learn more about what each unique Mayo Clinic campus has to offer, and where your best fit is. 

Equal Opportunity

All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, gender identity, sexual orientation, national origin, protected veteran status or disability status. Learn more about the 'EOE is the Law'.  Mayo Clinic participates in E-Verify and may provide the Social Security Administration and, if necessary, the Department of Homeland Security with information from each new employee's Form I-9 to confirm work authorization.

Recruiter
Kara SchottQualifications:

Qualified candidates should hold a PhD or MD/PhD in physiology, neuroscience, molecular biology, or a related discipline and be within five years of PhD completion. This position is not intended for clinical training and is not open to MD/MBBS candidates seeking clinical roles.

Experience in advanced imaging, single-cell or spatial transcriptomics, and mouse physiological studies is highly desirable, and candidates with expertise in these areas are strongly encouraged to apply.


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About Mayo Clinic

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Mayo Clinic is the largest integrated, not-for-profit medical group practice in the world. We're building the future, one where the best possible care is available to everyone — and more people can heal at home. Our relentless research turns into earlier diagnoses and new cures. That's how we inspire hope in those who need it most. At Mayo Clinic, experts work together to solve the most challenging unmet needs of patients. Our history of innovation dates back almost 150 years, when brothers Will and Charlie Mayo pioneered an integrated, team-based approach to medicine. Today, that trailblazing spirit drives innovations like Mayo Clinic Platform — which powers new technologies to change how care is delivered to all.

Industry

Hospitals

Company size

10,000+ Employees

Headquarters location

Rochester, MN, US

Year founded

1919