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Single Cell Rna Sequencing Jobs in Boston, MA (NOW HIRING)

Aitia

Sr. Director/Director Precision Oncology

Cambridge, MA · On-site

$180K - $240K/yr

Deep understanding of biological data and hands-on experience with a variety of omics data sets, including single-cell RNA-seq data * Knowledge of standard bioinformatics pipelines, data processing ...

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AllSTEM Connections

Biologist

Boston, MA · On-site

$101K - $119K/yr

... sequencing, and data QC (preferably Illumina). Direct experience with RNA-seq (bulk) and amplicon-seq. • Direct experience with single-cell and single-nucleus RNA-seq library preparation is ...

Harvard University

Research Assistant III Lab

Boston, MA · On-site

$54/hr

For this reason, nascent RNA-seq methods in conjunction with Next Generation Sequencing (NGS ... Bachelor's degree in Molecular Biology, Cell Biology, Biochemistry, or related discipline, or 4 or ...

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All JobsSingle Cell Rna Sequencing JobsSingle Cell Rna Sequencing Jobs in Boston, MA

Single Cell Rna Sequencing information

See Boston, MA salary details

$13

$23

$32

How much do single cell rna sequencing jobs pay per hour?

As of Jul 5, 2026, the average hourly pay for single cell rna sequencing in Boston, MA is $23.51, according to ZipRecruiter salary data. Most workers in this role earn between $18.27 and $29.52 per hour, depending on experience, location, and employer.

What are some common challenges faced by researchers working in Single Cell RNA Sequencing, and how can they be addressed?

Researchers in Single Cell RNA Sequencing often encounter challenges such as sample preparation variability, data complexity, and managing large datasets. Ensuring high-quality single-cell suspensions and minimizing cell loss during processing are critical steps. Additionally, interpreting data requires proficiency with bioinformatics tools and collaboration with computational biologists. Staying up-to-date with evolving protocols and leveraging multi-disciplinary teamwork can help address these challenges effectively.

What is the difference between Single Cell Rna Sequencing vs Single Cell Genomics Technician?

AspectSingle Cell Rna SequencingSingle Cell Genomics Technician
CredentialsTypically requires a degree in biology, molecular biology, or related fields; experience with sequencing technologiesSimilar credentials; often with laboratory or technical certifications in genomics
Work EnvironmentLaboratories performing sequencing, data analysis, and sample preparationLaboratories focused on sample processing, sequencing support, and data collection
Industry UsageUsed in research labs, biotech, and pharmaceutical companies for gene expression studiesCommon in genomics research centers, biotech firms, and academic labs

Both roles involve working with genomic technologies and require similar educational backgrounds. However, Single Cell Rna Sequencing specialists focus more on RNA analysis and data interpretation, while Single Cell Genomics Technicians support sample preparation and sequencing workflows. Understanding these differences helps in choosing the right career path or job search focus.

What are the key skills and qualifications needed to thrive as a Single Cell RNA Sequencing Specialist, and why are they important?

To thrive as a Single Cell RNA Sequencing Specialist, you need a solid background in molecular biology, genomics, and data analysis, typically supported by a relevant degree in the life sciences. Familiarity with sequencing platforms (such as 10x Genomics or Illumina), bioinformatics tools (like Seurat or Cell Ranger), and experience with data visualization are crucial. Attention to detail, problem-solving ability, and strong communication skills help ensure accurate results and effective collaboration with research teams. Mastering these skills is essential for generating high-quality data, troubleshooting experiments, and translating complex findings into actionable insights.

What is single cell RNA sequencing?

Single cell RNA sequencing (scRNA-seq) is a technique that allows researchers to examine the gene expression profiles of individual cells. Unlike traditional RNA sequencing, which measures average gene expression across thousands or millions of cells, scRNA-seq reveals the unique transcriptomic signature of each cell. This method is valuable for studying cellular diversity, identifying rare cell types, and understanding complex biological processes such as development, disease progression, and immune responses.
What are popular job titles related to Single Cell Rna Sequencing jobs in Boston, MA? For Single Cell Rna Sequencing jobs in Boston, MA, the most frequently searched job titles are:
What job categories do people searching Single Cell Rna Sequencing jobs in Boston, MA look for? The top searched job categories for Single Cell Rna Sequencing jobs in Boston, MA are:
What cities near Boston, MA are hiring for Single Cell Rna Sequencing jobs? Cities near Boston, MA with the most Single Cell Rna Sequencing job openings:
Single Cell Rna Sequencing jobs near you
Infographic showing various Single Cell Rna Sequencing job openings in Boston, MA as of June 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $48,911 per year, or $23.5 per hour.
Scientist, CNS Biology Research

Scientist, CNS Biology Research

Alnylam Pharmaceuticals

Cambridge, MA • On-site

$110K - $165K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 19 days ago

Job description

Overview
We are seeking a motivated and knowledgeable Scientist to join our CNS Biology Research team. The ideal candidate will bring a strong scientific background in motor neuron diseases and a deep understanding of the underlying disease biology and therapeutic landscape. They will thrive in a collaborative, fast-paced environment and demonstrate the ability to communicate complex scientific concepts across functions. Working closely with a multidisciplinary team, the Scientist will be responsible for identifying and validating novel drug targets, championing early programs, and supporting programs as they advance through clinical stages.
This position is onsite, located in Cambridge, MA.
Key Responsibilities
  • Contribute to Alnylam's growing pipeline by identifying new siRNA drug-targets that are based on human genetics, literature, academic collaborations, genomic approaches, etc. across the neurodegenerative space.
  • Design and execute proof of concept experiments in animal and in vitro iPSC disease models.
  • Design studies, coordinate activities, and lead from the bench.
  • Serve as Biology Lead on select neurodegenerative/neuromuscular programs, overseeing lead discovery activities for the selection of drug candidates for further development.
  • Work with multifunctional teams to shepherd a drug candidate through the lead selection and development process to the clinic.
  • Support programs through CTA/IND filing processes.
  • Manage relationships with contract research organizations (CROs) and/or academic collaborators, including development of research plans and data analysis.
  • Mentor junior scientists.
  • Collaborate and communicate results with key stakeholders throughout organization and external partners

Qualifications
  • PhD in biology or biomedical sciences-related field.
  • Post doc in academia or industry or 1-2 years of experience preferred.
  • Individuals with expertise in Amyotrophic Lateral Sclerosis (ALS) are strongly encouraged to apply.
  • Strong publication record.
  • In vitro technical skills including RNA and protein quantification, high-content image-based and functional assays related to disease biology, and single-cell RNA sequencing.
  • Thorough understanding of relevant in vivo mammalian disease models strongly preferred, with experience in intracerebroventricular (ICV) injections, necropsy, behavioral analysis, ex vivo tissue processing, and downstream analysis including molecular and histological assessments.
  • Strong organizational skills with the ability to proactively multitask are a must.
  • Excellent interpersonal and communication skills with proven ability to work collaboratively in a fast-paced team environment.
  • Genuine curiosity for learning new biology and a passion for hands-on laboratory work.

#LI-JR1
U.S. Pay Range
$110,400.00 - $165,600.00
The pay range reflects the full-time base salary range we expect to pay for this role at the time of posting. Base pay will be determined based on a number of factors including, but not limited to, relevant experience, skills, and education. This role is eligible for an annual short-term incentive award (e.g., bonus or sales incentive) and an annual long-term incentive award (e.g., equity).
Alnylam's robust Total Rewards package is designed to support your overall health and well-being. We offer comprehensive benefits including medical, dental, and vision coverage, life and disability insurance, a lifestyle reimbursement program, flexible spending and health savings accounts and a 401(k)with a generous company match. Eligible employees enjoy paid time off, wellness days, holidays, and two company-wide recharge breaks. We also offer generous family resources and leave. Our commitment to your well-being reflects our belief that caring for our people fuels the impact we create together.
Learn more about these and additional benefits offered by Alnylam by visiting the Benefits section of the Careers website: https://www.alnylam.com/careers
About Alnylam
We are the leader in RNAi therapeutics - a revolutionary approach with the potential to transform the lives of people with rare and common diseases. Built on Nobel Prize-winning science, Alnylam has delivered the breakthroughs that made RNAi therapeutics possible and are just at the beginning of what's possible. Our deep pipeline, late-stage programs, and bold vision reflect our core values: fierce innovation, passion for excellence, purposeful urgency, open culture and commitment to people. We're proud to be a globally recognized top employer, where an authentic, inclusive culture and breakthrough thinking fuel one another.
At Alnylam, we commit to an inclusive recruitment process and equal employment opportunity. Qualified applicants will receive consideration for employment without regard to their sex, gender or gender identity, sexual orientation, race, color, ethnicity, national origin, ancestry, citizenship, religion, creed, physical or mental disability, pregnancy status or related conditions, genetic information, veteran or military status, marital or familial status, political affiliation, age, or any other factor protected by federal, state, or local law. Alnylam is an E-Verify Employer.

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