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Sequencing Jobs in Massachusetts (NOW HIRING)

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Their sequencing services are used daily by thousands of innovators, including Nobel laureates, Fortune 100 pharma, and over 70,000 scientists. They began by revolutionizing plasmid sequencing ...

Biophysics Programmer

Charlestown, MA

  • Medical

  • Dental

  • Vision

  • Retirement

Create custom sequencing analysis and visualization tools to evaluate the influence of new features on essential metrics, driving our ongoing innovation. Collaborate actively with our ...

Their sequencing services are used daily by thousands of innovators, including Nobel laureates, Fortune 100 pharma, and over 70,000 scientists. They began by revolutionizing plasmid sequencing ...

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Their sequencing services are used daily by thousands of innovators, including Nobel laureates, Fortune 100 pharma, and over 70,000 scientists. They began by revolutionizing plasmid sequencing ...

Bioinformatics Scientist

Boston, MA · On-site

$170K - $190K/yr

Their sequencing services are used daily by thousands of innovators, including Nobel laureates, Fortune 100 pharma, and over 70,000 scientists. They began by revolutionizing plasmid sequencing ...

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Showing results 1-20

Sequencing information

See Massachusetts salary details

$12

$45

$86

How much do sequencing jobs pay per hour?

As of Aug 17, 2026, the average hourly pay for sequencing in Massachusetts is $45.74, according to ZipRecruiter salary data. Most workers in this role earn between $28.88 and $59.31 per hour, depending on experience, location, and employer.

What is sequencing?

Sequencing in a job context typically refers to the process of determining the order in which tasks, operations, or steps are performed, especially in fields like laboratory science, manufacturing, or project management. In genomics, sequencing specifically involves determining the precise order of nucleotides in DNA or RNA. Professionals working in sequencing roles may operate specialized equipment, analyze data, and ensure quality control. Sequencing is crucial for research, diagnostics, and production efficiency, depending on the industry. Mastery of sequencing techniques and attention to detail are important skills for these positions.

What are the key skills and qualifications needed to thrive as a sequencing technician, and why are they important?

To thrive as a Sequencing Technician, you need a solid background in molecular biology, laboratory techniques, and a relevant degree such as biology or biotechnology. Familiarity with DNA sequencing platforms (like Illumina or Oxford Nanopore), laboratory information management systems (LIMS), and certifications in laboratory safety are typically required. Attention to detail, problem-solving skills, and effective teamwork set outstanding technicians apart. These competencies ensure accurate sequencing results, maintain laboratory efficiency, and support critical research or diagnostic projects.

What are some common challenges faced by professionals working in sequencing labs, and how can they be overcome?

Professionals in sequencing labs often encounter challenges such as maintaining sample integrity, managing large datasets, and troubleshooting instrument malfunctions. To address these, it's important to follow strict protocols for sample handling, stay organized with data management tools, and proactively perform routine equipment maintenance. Collaboration with bioinformaticians and other lab members is also key, as it helps in troubleshooting and optimizing workflows. Ongoing training and staying updated with advances in sequencing technology can further help overcome these challenges.

What is the difference between Sequencing vs DNA Analysis?

AspectSequencingDNA Analysis
Required CredentialsLaboratory certifications, molecular biology trainingLaboratory certifications, molecular biology training
Work EnvironmentLaboratories, research facilitiesLaboratories, research facilities
Industry UsageGenomics, medical research, biotechGenomics, forensic science, medical diagnostics
Common Search/ComparisonYesYes

Sequencing involves determining the exact order of nucleotides in DNA, while DNA analysis encompasses various techniques to interpret and compare DNA sequences. Both roles require similar credentials and are used in comparable environments within genomics and biotech industries. Sequencing is a specific process within the broader scope of DNA analysis, making them closely related but distinct in focus.

What cities in Massachusetts are hiring for Sequencing jobs?

Cities in Massachusetts with the most Sequencing job openings:

Infographic showing various Sequencing job openings in Massachusetts as of August 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $95,130 per year, or $45.7 per hour.

Scientist - RNA Sequencing / ddPCR

Thermo Fisher Scientific

Boston, MA

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 5 days ago


Thermo Fisher Scientific rating

7.7

Company rating: 7.7 out of 10

Based on 427 frontline employees who took The Breakroom Quiz

199th of 540 rated manufacturers


Job description

Work Schedule

First Shift (Days)

Environmental Conditions

Adherence to all Good Manufacturing Practices (GMP) Safety Standards, Laboratory Setting

Job Description

Scientist – RNA Sequencing / ddPCR

Position:

Shift: Full-Time; Monday – Friday; 8am-5pm EST

ONSITE:

This is a fully onsite role based at our customer’s site in (insert location – i.e. Boston, MA). We welcome applicants from all locations within the US. Please note that relocation assistance is not provided for this position, and any relocation costs will be the responsibility of the candidate.  

Must be legally authorized to work in the United States without sponsorship. 

Must be able to pass a comprehensive background check, which includes a drug screening. 

At Thermo Fisher Scientific, you’ll discover meaningful work that makes a positive impact on a global scale. Join our colleagues in bringing our Mission to life - enabling our customers to make the world healthier, cleaner and safer. We provide our teams with the resources needed to achieve individual career goals while taking science a step beyond through research, development and delivery of life-changing therapies. With clinical trials conducted in 100+ countries and ongoing development of novel frameworks for clinical research through our PPD clinical research portfolio, our work spans laboratory, digital and decentralized clinical trial services. Your determination to deliver quality and accuracy will improve health outcomes that people and communities depend on – now and in the future.

Thermo Fisher's clinical research business is a leading global contract research organization and world leader in serving science. We are passionate, deliberate, and driven by our mission – to enable our customers to make the world healthier, safer, and cleaner.

Our Laboratories Functional Service Partnership (FSP) team plays a direct role in advancing drug development by creating sustained groups of talent within our customers’ organizations to provide long-term support. Through this collaborative approach, our professionals bring their commitment to excellence, industry knowledge, and operational strength directly into customer environments, helping to enhance capabilities and advance the delivery of life-changing therapies.

Key responsibilities:

  • Independently design, execute, troubleshoot, optimize, and interpret analytical method development experiments using digital PCR, qPCR, ddPCR, bulk RNA sequencing
  • NanoString nCounter, Oxford Nanopore sequencing NICE TO HAVE
  • Perform DNA/RNA extraction, sequencing library preparation, sequencer operation, digital PCR workflows, and other associated laboratory procedures with a high standard of technical rigor.
  • Design and conduct experiments to evaluate assay performance characteristics, including accuracy, precision, linearity, sensitivity, and technology comparisons.
  • Analyze and interpret data using R, GraphPad Prism, JMP, and related bioinformatics tools to support assay development, process characterization, and technology evaluation.
  • Organize, analyze, and summarize data for project updates, technical reports, study summaries, and internal presentations.
  • Author and review protocols, SOPs, technical reports, study documentation, and regulatory support documents.
  • Collaborate cross-functionally with partners in analytical development, process development, research, and other teams to support analytical strategy and project goals.
  • Operate, maintain, and troubleshoot laboratory instrumentation, including NextSeq 2000, NovaSeq X, PromethION 24, NanoString nCounter Prep Station/Digital Analyzer, and digital PCR platforms.
  • Maintain laboratory organization, instrument readiness, reagent inventory, and compliance with documentation and laboratory best practices.

Education and Experience:

  • Bachelor's degree in lab sciences such as Chemistry, Biochemistry, Material Science, Immunology, Biology, Molecular Biology or similar
  • Scientist: Previous experience that provides the knowledge, skills, and abilities to perform the job (comparable to 2+ years’)
  • OR Masters degree

In some cases, an equivalency, consisting of a combination of appropriate education, training and/or directly related experience, will be considered sufficient for an individual to meet the requirements of the role.

Knowledge, Skills and Abilities:

  • Digital PCR (ddPCR, dPCR)
  • qPCR
  • NanoString nCounter (NICE TO HAVE)
  • Bulk RNA-sequencing library preparation and sequencing
  • DNA/RNA extraction
  • Oxford Nanopore library preparation and sequencing workflows
  • Statistical analysis and data visualization using R, GraphPad Prism, JMP, and Microsoft Excel
  • Differential gene expression analysis using DESeq2
  • Pathway enrichment analysis using GSEA and Gene Ontology
  • Sequencing data quality control, interpretation, and reporting
  • Analysis of digital PCR and sequencing datasets to support method development and process characterization
  • Proficiency with Microsoft PowerPoint, Excel, and Word

Working Environment:

Below is listed the working environment/requirements for this role:

Able to communicate, receive, and understand information and ideas with diverse groups of people in a comprehensible and reasonable manner.

Able to work upright and stationary and/or standing for typical working hours.

Able to lift and move objects up to 25 pounds

Able to work in non-traditional work environments.

Able to use and learn standard office equipment and technology with

proficiency.

May have exposure to potentially hazardous elements, including infectious agents, typically found in healthcare or laboratory environments.

Able to perform successfully under pressure while prioritizing and handling multiple projects or activities.

Benefits

We offer competitive remuneration, annual incentive plan bonus, healthcare, and a range of employee benefits. Thermo Fisher Scientific offers employment with an innovative, forward-thinking organization, and outstanding career and development prospects. We offer an exciting company culture that stands for integrity, intensity, involvement, and innovation!

Compensation and Benefits

The hourly pay range estimated for this position based in Massachusetts is $35.00–$43.00.

This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:

  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs

  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement

  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy

  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan

  • Employees’ Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards


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