Remote Software Engineer Secret Clearance Jobs in Rochester, MN

Senior Software Engineer - UKG & Boomi Integration
The Administrative Integration Services Unit is seeking a Senior Software Engineer to provide technical leadership for Mayo Clinic's enterprise integration platform supporting Human Resources, Workforce Management, Payroll, Finance, and Supply Chain business functions.
This role serves as a senior technical leader responsible for designing, developing, and supporting enterprise integrations using the Boomi Integration Platform, with a primary focus on UKG Pro, UKG Dimensions (Workforce Management), Oracle ERP, and other enterprise applications. The successful candidate will partner closely with Product Managers, Enterprise Architects, business stakeholders, and engineering teams to deliver scalable, secure, and resilient integration solutions that support Mayo Clinic's mission.
The ideal candidate is an experienced enterprise integration engineer who combines strong hands-on development skills with architecture expertise, production support experience, and a passion for mentoring engineers and driving engineering excellence.
Key Responsibilities:
*Lead the design, development, implementation, and support of enterprise integrations using the Boomi Integration Platform.
*Serve as the technical lead for complex integration initiatives supporting UKG, Oracle ERP, identity management, payroll, finance, and other enterprise systems.
*Define integration architecture, reusable frameworks, design patterns, and engineering standards that improve scalability, maintainability, and reliability across the integration platform.
*Design secure, high-performing integrations utilizing REST APIs, SOAP services, SFTP, event-driven messaging, and file-based integration patterns.
*Develop complex data transformations using XML, JSON, XSLT, JavaScript, SQL, and Boomi mapping components.
*Lead technical design sessions and provide architectural guidance throughout the software development lifecycle.
*Establish best practices for integration development, testing, deployment, monitoring, logging, exception handling, and operational support.
*Partner with Product Managers, Enterprise Architects, HR, Payroll, Finance, and business stakeholders to translate business requirements into technical solutions.
*Participate as a technical leader within the SAFe Agile framework, providing technical direction during planning, backlog refinement, estimation, and implementation activities.
*Perform expert-level troubleshooting of production integrations, conduct root cause analysis, and implement long-term corrective actions to improve platform stability.
*Lead code reviews, establish development standards, and mentor engineers through technical coaching and knowledge sharing.
*Drive continuous improvement initiatives focused on automation, DevOps, observability, integration performance, and operational excellence.
*Develop and maintain architecture documentation, interface specifications, operational runbooks, and technical standards.
*Serve as a trusted technical advisor for enterprise integration strategy and architecture.
*Lead technical decision-making and influence integration standards across multiple product teams.
*Foster engineering excellence through mentoring, code reviews, technical coaching, and continuous improvement.
This vacancy is not eligible for sponsorship/ we will not sponsor or transfer visas for this position. Also, Mayo Clinic DOES NOT participate in the F-1 STEM OPT extension program.
Qualifications
Required qualifications for this position include: Bachelor's Degree in Computer Science/Engineering or related field with 5 years of experience as noted below; OR an Associate's degree in Computer/Science/Engineering or related field with 7 years of experience.
Have in-depth knowledge of software engineering with experience coding applications or services in a high-level language (C, C++, Golang, Java, C# etc.) and a basic knowledge of related fields.
Demonstrated problem solving and time management skills. Possesses strong technical aptitude for designing and implementing software solutions. Experience with modern application development frameworks
Knowledge of professional software engineering practices & best practices for the full software development life cycle, including coding standards, code reviews, source control management, build processes, testing, and operations. Deep hands-on technical expertise, excellent verbal and written communication skills. Experience with Agile software development techniques.
• Preferred qualifications for this position include:
• Master's degree in Computer Science/Engineering or related field.
• Ability to use a wide variety of open-source technologies and cloud-based services.
• Experience writing software for the cloud (GCP, AWS, Azure).
• Experience in databases, analytics, big data systems or business intelligence products.
• Experience building high-performance, highly available and scalable distributed systems.
• Experience developing software for healthcare related industries.
Required Qualifications:
*Extensive experience developing enterprise integrations using the Boomi Integration Platform.
*Experience integrating UKG Pro, UKG Dimensions, UKG Workforce Management, or comparable Human Capital Management (HCM) platforms.
About Us
Why Mayo Clinic
Mayo Clinic is top-ranked in more specialties than any other care provider according to U.S. News & World Report. As we work together to put the needs of the patient first, we are also dedicated to our employees, investing in competitive compensation and comprehensive benefit plans - to take care of you and your family, now and in the future. And with continuing education and advancement opportunities at every turn, you can build a long, successful career with Mayo Clinic.
Benefits Highlights

• Medical: Multiple plan options.
• Dental: Delta Dental or reimbursement account for flexible coverage.
• Vision: Affordable plan with national network.
• Pre-Tax Savings: HSA and FSAs for eligible expenses.
• Retirement: Competitive retirement package to secure your future.

About the Team
Just as our reputation has spread beyond our Minnesota roots, so have our locations. Today, our employees are located at our three major campuses in Phoenix/Scottsdale, Arizona, Jacksonville, Florida, Rochester, Minnesota, and at Mayo Clinic Health System campuses throughout Midwestern communities, and at our international locations. Each Mayo Clinic location is a special place where our employees thrive in both their work and personal lives. Learn more about what each unique Mayo Clinic campus has to offer, and where your best fit is.
Equal Opportunity
All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, gender identity, sexual orientation, national origin, protected veteran status or disability status. Learn more about the "EOE is the Law". Mayo Clinic participates in E-Verify and may provide the Social Security Administration and, if necessary, the Department of Homeland Security with information from each new employee's Form I-9 to confirm work authorization.