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Protein Engineering Jobs in Philadelphia, PA (NOW HIRING)

The Director, Protein Sciences will integrate target biology insight, computational protein design, cell engineering, and experimental protein sciences to drive the generation of high-quality ...

Manager, Maintenance & Engineering

Devault, PA · On-site

$112.50 - $137.50/hr

Beyond Meat, Inc., otherwise known as Beyond The Plant Protein Company, is a plant protein company ... The Manager, Maintenance & Engineering, is responsible for managing and directing the daily ...

... protein sample handling skills. Experience with operating liquid handling systems (e.g., Hamilton, Tecan, Beckman) and/or basic programming experience (Python, JavaScript, R, C++/C#). Hands on ...

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Protein Engineering information

See Philadelphia, PA salary details

$29.8K

$57.8K

$87.7K

How much do protein engineering jobs pay per year?

As of Aug 23, 2026, the average yearly pay for protein engineering in Philadelphia, PA is $57,825.00, according to ZipRecruiter salary data. Most workers in this role earn between $43,200.00 and $66,100.00 per year, depending on experience, location, and employer.

What is protein engineering?

A Protein Engineering job involves designing, modifying, and optimizing proteins for specific applications in medicine, biotechnology, and industry. Scientists in this field use computational modeling, directed evolution, and genetic engineering to enhance protein functions. Roles may include developing enzymes for drug production, improving therapeutic proteins, or creating biomaterials. This work often requires expertise in molecular biology, biochemistry, and structural biology.

What are the typical daily responsibilities of someone working in protein engineering?

A typical day in Protein Engineering involves designing and conducting experiments to modify protein sequences, expressing and purifying proteins, and analyzing their structure or function using techniques like chromatography and spectroscopy. You will often document your results, troubleshoot unexpected findings, and present data to colleagues or project teams. Collaboration with scientists in molecular biology, bioinformatics, and structural biology is common to ensure robust experimental design and data interpretation. The role may also include literature reviews to stay updated with the latest research and participating in team meetings to plan next steps or project timelines.

What are the key skills and qualifications needed to thrive in protein engineering, and why are they important?

To thrive in Protein Engineering, you need a solid background in biochemistry, molecular biology, and genetic engineering, typically supported by a relevant advanced degree. Experience with laboratory techniques such as PCR, site-directed mutagenesis, protein expression/purification, and analytical tools like mass spectrometry or chromatography is essential. Strong problem-solving abilities, attention to detail, and effective teamwork and communication skills help you stand out in this role. These competencies are crucial for designing novel proteins, collaborating in multidisciplinary teams, and ensuring successful project outcomes in biotech or pharmaceutical environments.

How much do protein engineers make?

Protein engineers typically earn a median salary ranging from $70,000 to $120,000 annually, depending on experience, education, and location. Advanced skills in molecular biology, bioinformatics, and laboratory techniques can lead to higher compensation, especially in biotech or pharmaceutical industries.

What do protein engineers do?

Protein engineers design and modify proteins to improve their functions or create new ones, often using techniques like directed evolution and computational modeling. They work in research labs, utilizing tools such as gene editing and structural analysis to develop applications in medicine, agriculture, and industry.

What are the most commonly searched types of Protein Engineering jobs in Philadelphia, PA?

The most popular types of Protein Engineering jobs in Philadelphia, PA are:

What job categories do people searching Protein Engineering jobs in Philadelphia, PA look for?

The top searched job categories for Protein Engineering jobs in Philadelphia, PA are:

Infographic showing various Protein Engineering job openings in Philadelphia, PA as of August 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $57,825 per year, or $27.8 per hour.

Director, Protein Sciences

Jj

Spring House, PA

Full-time

Retirement, PTO

Re-posted 14 days ago


Job description

At Johnson & Johnson,we believe health is everything. Our strength in healthcare innovation empowers us to build aworld where complex diseases are prevented, treated, and cured,where treatments are smarter and less invasive, andsolutions are personal.Through our expertise in Innovative Medicine and MedTech, we are uniquely positioned to innovate across the full spectrum of healthcare solutions today to deliver the breakthroughs of tomorrow, and profoundly impact health for humanity.Learn more at jnj.com

As guided by Our Credo, Johnson & Johnson is responsible to our employees who work with us throughout the world. We provide an inclusive work environment where each person is considered as an individual. At Johnson & Johnson, we respect the diversity and dignity of our employees and recognize their merit.

Job Function:

Discovery & Pre-Clinical/Clinical Development

Job Sub Function:

Biotherapeutics R&D

Job Category:

People Leader

All Job Posting Locations:

Cambridge, Massachusetts, United States of America, Spring House, Pennsylvania, United States of America

Job Description:

About Innovative Medicine

Our expertise in Innovative Medicine is informed and inspired by patients, whose insights fuel our science-based advancements. Visionaries like you work on teams that save lives by developing the medicines of tomorrow.

Join us in developing treatments, finding cures, and pioneering the path from lab to life while championing patients every step of the way.

Learn more at https://www.jnj.com/innovative-medicine

Johnson & Johnson Innovative Medicine R&D is recruiting for a Director, Protein Sciences. This position is a hybrid role and can be located in Spring House, PA or Cambridge, MA.

The Director, Protein Sciences will integrate target biology insight, computational protein design, cell engineering, and experimental protein sciences to drive the generation of high-quality immunogens and screening reagents. As a key member in the Antibody Discovery Group, this position will play a central role in evaluating novel protein targets, including mining and interpreting public-domain data, and applying innovative structural and computational tools to inform antigen design strategies and deliver reagents for hit generation campaigns.

The Director will contribute to multiple aspects of antibody discovery in a globally-integrated research environment, with responsibility spanning from early target assessment through reagent generation and discovery enablement. This role represents a critical function within a dynamic Biologics Discovery organization committed to delivering next-generation biotherapeutics to patients.

We are seeking a scientifically thorough and collaborative leader who can work across discovery teams to drive impact across a diverse portfolio of innovative drug concepts. Success will require the ability to operate effectively within a highly coordinated, fast-paced environment, while contributing both strategically and hands-on to program advancement.

Principal Responsibilities:

Target Assessment and Antigen Strategy

Lead evaluation of therapeutic targets, including:

  • Structural, sequence, and domain architecture analysis

  • Integration of internal and external data (literature, databases, structural repositories)

Define antigen and engineered-cell design strategies to support antibody discovery:

  • Construct design and domain selection

  • Epitope exposure and conformational state optimization

  • Strategies for difficult targets (e.g., multi-pass membrane proteins) including Nanodisc technology and nucleic acid immunogen design

Protein Design & Engineering

Apply computational and structural biology approaches to protein design:

  • Homology modeling, structural analysis, and rational mutagenesis

  • Integration of emerging AI/ML-based protein design tools

Engineer proteins to improve:

  • Stability and expression

  • Functional relevance for discovery assays and immunization

Qualifications:

  • A minimum of a Ph.D. in Biochemistry, Structural Biology, Protein Engineering, or a related discipline is required.

  • A minimum of 10 years of experience in biologics discovery or protein sciences is required.

  • Demonstrated leadership experience within the pharmaceutical or biotech industry is required.

  • Strong knowledge in the following is required: antigen design and generation for antibody discovery; structural biology and protein sequence analysis; biologics discovery workflows from target to lead identification.

  • Experience or domain knowledge in Oncology, Immunology, and/or Neuroscience is preferred.

  • People management experience is preferred.

  • Must have excellent verbal and written communication skills.

  • Must be strategic with a strong scientific mindset.

  • The ability to operate effectively within a highly coordinated, fast-paced matrix environment is required.

Johnson & Johnson is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, age, national origin, disability, protected veteran status or other characteristics protected by federal, state or local law. We actively seek qualified candidates who are protected veterans and individuals with disabilities as defined under VEVRAA and Section 503 of the Rehabilitation Act.

Johnson & Johnson is committed to providing an interview process that is inclusive of our applicants' needs. If you are an individual with a disability and would like to request an accommodation, external applicants please contact us via https://www.jnj.com/contact-us/careers, internal employees contact AskGS to be directed to your accommodation resource.

#LI-Hybrid

Required Skills:

Preferred Skills:

Analytical Reasoning, Biochemistry, Business Savvy, Chemistry, Manufacturing, and Control (CMC), Clinical Research and Regulations, Clinical Trial Designs, Compliance Management, Developing Others, Drug Discovery Development, Inclusive Leadership, Leadership, Molecular Diagnostics, Operational Excellence, Pharmacovigilance, Process Improvements, Productivity Planning, Product Strategies, Program Management, Scientific Research, Stakeholder Management

The anticipated base pay range for this position is :

$164,000.00 - $282,900.00

Additional Description for Pay Transparency:

Subject to the terms of their respective plans, employees are eligible to participate in the Company's consolidated retirement plan (pension) and savings plan (401(k)).
This position is eligible to participate in the Company's long-term incentive program.
Subject to the terms of their respective policies and date of hire, employees are eligible for the following time off benefits:
Vacation -120 hours per calendar year
Sick time - 40 hours per calendar year; for employees who reside in the State of Colorado -48 hours per calendar year; for employees who reside in the State of Washington -56 hours per calendar year
Holiday pay, including Floating Holidays -13 days per calendar year
Work, Personal and Family Time - up to 40 hours per calendar year
Parental Leave - 480 hours within one year of the birth/adoption/foster care of a child
Bereavement Leave - 240 hours for an immediate family member: 40 hours for an extended family member per calendar year
Caregiver Leave - 80 hours in a 52-week rolling period10 days
Volunteer Leave - 32 hours per calendar year
Military Spouse Time-Off - 80 hours per calendar year
For additional general information on Company benefits, please go to: - https://www.careers.jnj.com/employee-benefits