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Microscopy Scientist Jobs in California (NOW HIRING)

Scientist, TEM

Sunnyvale, CA · On-site

  • Retirement

Using advanced techniques in analytical chemistry, microscopy, surface analysis, and engineering sciences, we help clients solve complex challenges across the product lifecycle. What sets EAG apart ...

Scientist, TEM

Sunnyvale, CA · On-site

  • Retirement

Using advanced techniques in analytical chemistry, microscopy, surface analysis, and engineering sciences, we help clients solve complex challenges across the product lifecycle. What sets EAG apart ...

Project Scientist

Long Beach, CA · On-site

$75K - $95K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Perform flow cytometry, fluorescence microscopy, and related analyses. * Analyze and interpret ... D. in Life Sciences, Immunology, Cell Biology, Molecular Biology, Biomedical Sciences ...

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Showing results 1-20

Microscopy Scientist information

See California salary details

$49.8K

$128.4K

$171.7K

How much do microscopy scientist jobs pay per year?

As of Aug 13, 2026, the average yearly pay for microscopy scientist in California is $128,413.00, according to ZipRecruiter salary data. Most workers in this role earn between $106,100.00 and $170,700.00 per year, depending on experience, location, and employer.

What is a microscopy scientist?

A Microscopy Scientist is a specialist who utilizes various microscopy techniques to analyze materials, biological samples, or nanostructures at high magnifications. They work in research, quality control, and diagnostics across industries such as healthcare, pharmaceuticals, materials science, and biotechnology. Their responsibilities include operating and maintaining microscopes, preparing samples, interpreting data, and contributing to advancements in science and technology.

What are the key skills and qualifications needed to thrive as a microscopy scientist, and why are they important?

To thrive as a Microscopy Scientist, you need a strong background in biology, materials science, or related fields, combined with expertise in advanced microscopy techniques and image analysis. Familiarity with instruments such as electron, confocal, or atomic force microscopes, as well as software like ImageJ or MATLAB, is typically required, and specialized training or certifications are advantageous. Attention to detail, problem-solving ability, and effective communication are standout soft skills for this role. These competencies enable accurate sample analysis, high-quality data production, and effective collaboration within multidisciplinary research and development teams.

What are the typical day-to-day responsibilities of a microscopy scientist?

As a Microscopy Scientist, your daily tasks often include preparing and analyzing samples, operating advanced microscopy equipment, capturing and interpreting images, and documenting findings. You may also spend time maintaining instruments, troubleshooting technical issues, and collaborating with researchers or engineers from other disciplines. Regularly presenting data, contributing to project meetings, and assisting with method development or protocol optimization are common as well. This mix of hands-on work and teamwork helps drive innovation and accurate results in both academic and industry settings.

What are the most commonly searched types of Microscopy Scientist jobs in California? The most popular types of Microscopy Scientist jobs in California are:
What cities in California are hiring for Microscopy Scientist jobs? Cities in California with the most Microscopy Scientist job openings:
Infographic showing various Microscopy Scientist job openings in California as of August 2026, with employment types broken down into 1% Internship, 1% As Needed, 84% Full Time, 9% Part Time, 2% Temporary, and 3% Contract. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $128,413 per year, or $61.7 per hour.

Scientist/Senior Scientist, Advanced Microscopy and Spatial Profiling

Calico

South San Francisco, CA • On-site

$160K - $197K/yr

Full-time

Re-posted 12 days ago


Job description

Who We Are:

Calico (Calico Life Sciences LLC) is an Alphabet-founded research and development company whose mission is to harness advanced technologies and model systems to increase our understanding of the biology that controls human aging. Calico will use that knowledge to devise interventions that enable people to lead longer and healthier lives. Calico's highly innovative technology labs, its commitment to curiosity-driven discovery science, academic and industry partners, and vibrant drug-development pipeline, together create an inspiring and exciting place to catalyze and enable medical breakthroughs.

Position Description:

The Cellular Models and Assay Technologies (CMAT) lab and Microscopy group at Calico are looking for an innovative, technology-driven Scientist to join our teams. This role offers a rare chance to push the boundaries of microscopy and spatial biology within a biotech environment, where novel technologies can be rapidly translated into biological insights that directly inform therapeutic strategy. In collaboration with Biology subject matter experts, the successful candidate will invent, adapt, and apply advanced microscopy techniques to unravel the mechanisms underlying age and age-related disease. A primary area of focus will be the integration of Laser Capture Microdissection (LCM) with proximity biotinylation, in order to map molecular environments within cells and tissues. By combining these with fluorescent biosensors and morphological profiling, you will aim to identify and isolate specific cellular states for deeper phenotyping. 

This hands-on role requires deep expertise in Microscopy, Image Analysis, Cell and Tissue Biology, alongside the ability to develop or implement novel methods as needed. This role will evolve as scientific questions demand, and we are looking for a curious, versatile and proactive scientist who takes an active role in the evolution and expansion of their role. 

Responsibilities:

  • In collaboration with other Microscopy and Image Analysis experts, deploy cutting edge technologies to accelerate diverse projects across Calico
  • Apply Laser Capture Microdissection (LCM) to isolate specific cell populations or morphological features from cell cultures and tissue sections for downstream multiomics analysis
  • Accelerate LCM workflows through automated image analysis and segmentation
  • Design and optimize functional reporters in cells and tissues, e.g. proximity biotinylation, to map protein-protein interactions, and fluorescent biosensors to track cellular response to perturbation
  • Continuously explore this ever-evolving field and invent and/or implement novel systems as they become available

Position Requirements:

  • Ph.D. in Cell Biology, Bioengineering, Biophysics, or a related field with 3+ years of post-doctoral or industry experience
  • Extensive hands-on experience with complex fluorescence microscopy techniques (e.g. laser capture microdissection, smart microscopy, light sheet, live cell imaging, super-resolution, etc.)
  • Track record of developing or adapting novel microscopy methods to uncover biological insights
  • Demonstrated ability in quantitative image analysis, utilizing commercial software (e.g., Imaris, Arivis), open-source tools (e.g., FIJI, CellProfiler), and custom solutions (e.g., Python)
  • Experience with functional reporter systems in cells and/or tissues (e.g., proximity biotinylation, fluorescent biosensors) and demonstrated ability to rapidly adopt new techniques
  • Experience with mammalian cell culture and stable cell line generation with a diversity of delivery systems
  • Ability to operate independently, define experimental strategies, and prioritize multiple concurrent projects in a fast-paced environment
  • Exceptional interpersonal and communication skills and effective collaboration across functional groups
  • Must be willing to work onsite 5 days per week

Nice to Have:

  • Demonstrated proficiency in Laser Capture Microdissection (e.g. Leica LMD) applications in a diversity of cell and tissue types
  • Hands-on experience with proximity biotinylation techniques (i.e. BioID, APEX2, TurboID, BAR), including antibody conjugation strategies, fusion protein design, labeling kinetics optimization, and streptavidin-based enrichment
  • Hands-on experience with development, optimization, and application of fluorescent sensors and biosensors
  • Familiarity with custom microscope hardware and control software
  • Experience with complex cell culture models (e.g. primary culture, iPSC-derived neurons, microglia)
  • Experience with multiplex immunofluorescence and histological techniques, including tissue processing (FFPE and OCT blocks), cryosectioning, human tissues and patient-derived samples

The estimated base salary range for this role is $160,000 - $197,000. Actual pay will be based on a number of factors including experience and qualifications. This position is also eligible for two annual cash bonuses.