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Machine Learning Research Intern Jobs in Boston, MA

Manifold Bio

AI/ML Research Engineer

Boston, MA · On-site

They are seeking a talented Machine Learning Research Engineer to implement, scale, and optimize machine learning systems that power their antibody design platform and advance protein design ...

DraftKings

Senior Machine Learning Engineer

Boston, MA · On-site

$113K - $155K/yr

You'll turn cutting-edge machine learning research into scalable, production-ready systems that power critical decisions and customer experiences. Working at the intersection of data, engineering ...

Bracebridge Capital

Machine Learning Analyst

Boston, MA · On-site

$110K - $145K/yr

The work is highly collaborative and spans quantitative research, software engineering, and machine learning. Analysts work with other members of the machine learning team and portfolio managers to ...

Bracebridge Capital

Machine Learning Analyst

Boston, MA · On-site

$110K - $145K/yr

The work is highly collaborative and spans quantitative research, software engineering, and machine learning. Analysts work with other members of the machine learning team and portfolio managers to ...

Manifold Bio

AI/ML Research Engineer

Boston, MA · On-site

$140K - $225K/yr

Position Manifold Bio is seeking a talented Machine Learning Research Engineer to join our growing AI team. You will work closely with our research scientists to implement, scale, and optimize ...

Motional

Machine Learning Systems Engineer

Boston, MA · On-site +1

$144K - $192K/yr

You will work at the intersection of machine learning research and high-performance systems engineering. Your work will directly impact our ability to scale large-scale distributed model training and ...

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All JobsMachine Learning Research Intern JobsMachine Learning Research Intern Jobs in Boston, MA

Machine Learning Research Intern information

See Boston, MA salary details

$27.7K

$46.3K

$95.6K

How much do machine learning research intern jobs pay per year?

As of Aug 6, 2026, the average yearly pay for machine learning research intern in Boston, MA is $46,263.00, according to ZipRecruiter salary data. Most workers in this role earn between $35,300.00 and $50,000.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a machine learning research intern?

To thrive as a Machine Learning Research Intern, you need a strong foundation in mathematics, statistics, programming (especially Python), and an understanding of machine learning algorithms, typically supported by ongoing or completed studies in computer science or related fields. Familiarity with technical tools such as TensorFlow, PyTorch, scikit-learn, and experience with data analysis libraries are commonly required. Curiosity, problem-solving ability, and effective communication skills help interns stand out by enabling them to collaborate, share insights, and adapt to new research challenges. These skills ensure interns can contribute meaningfully to research projects, quickly learn new techniques, and effectively communicate their findings.

What are some typical challenges faced by machine learning research interns during their projects?

Machine Learning Research Interns often encounter challenges such as dealing with limited or messy datasets, tuning complex model architectures, and balancing innovative research with practical implementation. Additionally, they may need to quickly familiarize themselves with unfamiliar frameworks or tools and effectively communicate technical findings to both technical and non-technical team members. Successfully navigating these challenges can provide valuable learning experiences and help interns build strong problem-solving skills for future roles.

What does a machine learning research intern do?

A Machine Learning Research Intern assists in the development, implementation, and evaluation of machine learning models and algorithms under the supervision of experienced researchers. They often preprocess data, run experiments, analyze results, and contribute to research papers or technical reports. Interns also stay up to date with the latest advancements in machine learning, participate in team meetings, and sometimes help in coding or optimizing existing models. This role provides hands-on experience in applying theoretical knowledge to real-world problems and prepares interns for careers in AI research or development.
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Machine Learning Research Intern jobs near you
Infographic showing various Machine Learning Research Intern job openings in Boston, MA as of August 2026, with employment types broken down into 1% As Needed, 73% Full Time, 22% Part Time, 1% Temporary, and 3% Contract. Highlights an 88% Physical, 2% Hybrid, and 10% Remote job distribution, with an average salary of $46,263 per year, or $22.2 per hour.

AI/ML Research Engineer

Manifold Bio

Boston, MA • On-site

Full-time

Re-posted 14 days ago

Job description

Job Summary:
Manifold Bio is a platform biotechnology company pioneering AI-guided protein design and massively multiplexed in vivo screening. They are seeking a talented Machine Learning Research Engineer to implement, scale, and optimize machine learning systems that power their antibody design platform and advance protein design capabilities.
Responsibilities:
• Implement and optimize machine learning models for protein design
• Build and maintain scalable data processing pipelines for large-scale protein and molecular datasets
• Develop and deploy ML infrastructure for distributed training and inference across GPU clusters
• Collaborate with research scientists to translate experimental ML approaches into production-ready code
• Design and execute ML experiments with clear hypotheses and rigorous analysis
• Optimize model performance and computational efficiency for large-scale protein design tasks
• Build tools and utilities to support rapid prototyping and experimentation by the research team
Qualifications:
Required:
• Bachelor's or Master's degree in Computer Science, Machine Learning, Computational Biology, or related field
• 2+ years of hands-on experience with PyTorch and/or JAX for deep learning applications
• Strong proficiency in Python scientific computing stack (NumPy, Pandas, scikit-learn)
• Experience with distributed computing and GPU optimization techniques
• Familiarity with protein structure analysis, computational biology, or analogous problems in natural sciences
• Understanding of modern deep learning architectures and optimization techniques
• Experience implementing research papers or translating ML approaches to production systems
• Proficiency with version control (Git), testing frameworks, and software engineering best practices
• Strong problem-solving skills and ability to work independently on technical challenges
• Excellent written and verbal communication skills for cross-functional collaboration
Preferred:
• Experience training LLMs or diffusion generative models
• Knowledge of cloud computing platforms (AWS, GCP) and containerization (Docker, Kubernetes)
• Background in computational biology, bioinformatics, or structural biology
• Experience with large-scale data engineering and ETL pipelines
• Familiarity with MLOps practices and model deployment frameworks
Company:
Manifold Bio is building a protein barcoding platform to bring the power of multiplexed measurement. Founded in 2020, the company is headquartered in Boston, USA, with a team of 11-50 employees. The company is currently Early Stage.

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