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Hpc Postdoc information

What is an HPC postdoc?

HPC Postdocs, or High Performance Computing Postdoctoral Researchers, are scientists who have completed their PhD and are conducting advanced research that leverages powerful computational systems to solve complex problems. They often work at universities, research institutes, or national laboratories, focusing on developing new algorithms, optimizing code for supercomputers, or applying computational methods to scientific challenges. HPC Postdocs collaborate with interdisciplinary teams and may also provide support or training in HPC techniques for other researchers. Their work is essential for pushing the boundaries of science in fields such as physics, climate modeling, computational biology, and engineering.

What skills and qualifications are needed to thrive as an HPC postdoc?

To thrive as an HPC Postdoc, you need advanced knowledge in computational science, parallel programming, and a relevant doctoral degree, often in fields like physics, computer science, or engineering. Expertise in programming languages (such as C/C++, Fortran, Python), experience with high-performance computing systems, and familiarity with tools like MPI, OpenMP, or GPU computing frameworks are typically required. Strong analytical thinking, problem-solving, and collaboration skills set outstanding candidates apart in research environments. These competencies are crucial for conducting cutting-edge research, optimizing complex simulations, and advancing scientific discovery using supercomputing resources.

What are common challenges faced by an HPC postdoc when optimizing scientific applications for supercomputing environments?

HPC Postdocs often encounter the challenge of adapting complex scientific codes to efficiently utilize advanced supercomputing architectures. This may involve addressing issues such as parallel scalability, memory bottlenecks, and compatibility with different hardware or software environments. Collaborating closely with domain scientists, software engineers, and IT staff is essential to troubleshoot performance issues and implement effective solutions. Staying up-to-date with emerging HPC technologies and optimization techniques is also crucial for success in this role.

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Postdoctoral Fellow

The University of Alabama at Birmingham

Birmingham, AL • On-site

$45K - $62K/yr

Full-time

Re-posted 20 days ago

University Of Alabama At Birmingham rating

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Company rating: 7.7 out of 10

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Job description

Position Information
Job Title Postdoctoral Fellow Department Name 311350000 Urology Chair Office School/College School of Medicine Job Description
Mentor: Dr. Chen-Han Wilfred Wu
The Department of Urology is seeking a highly motivated and talented postdoctoral scholar to join the urogenetics research group led by Dr. Chen-Han Wilfred Wu. The Wu Lab operates at the forefront of Precision Surgery, Genetics, and Big Data Analysis. This position is ideal for a Computational Scientist, Bioinformatician, Genetic Epidemiologist, or Statistician eager to leverage large-scale genomic and clinical datasets. The successful candidate will investigate the genetics and phenotypics basis of urological conditions, including kidney stone disease, male infertility, congenital anomalies of the kidney and urinary tract (CAKUT), and genitourinary cancers.
Key Responsibilities:
  • Data Analysis: Perform advanced genomic and phenotypic analyses, including the processing of big data, such as high-throughput sequencing data (e.g., WES, WGS, RNA-seq), electronic medical records, and large-scale biobank data (e.g., UK Biobank, All of Us).
  • Algorithm Development: Develop and implement robust computational pipelines to integrate multi-omic data with clinical phenotypic information from EMR.
  • Research Integration: Collaborate with wet-lab investigators to provide computational insights and cross-validate findings derived from dry-lab analyses.
  • Publication & Presentation: Lead the preparation of high-quality manuscripts for peer-reviewed journals and present findings at major national and international conferences (e.g., AUA, ASHG, ACMG).
  • Grant Support: Assist in drafting research proposals and generating preliminary data for NIH and other federal funding applications.
  • Mentoring: Supervise and mentor junior trainees, including medical, graduate, and undergraduate students as appropriate.
Required Qualifications
  • Education: Ph.D. in Genetics, Genomics, Bioinformatics, Computational Science, Statistics, or a related quantitative field. An MD/DO with a strong computational research background will also be considered.
  • Technical Skills:
    • Proficiency in programming languages, such as R or Python.
    • Extensive experience with Linux/Unix environments and High-Performance Computing (HPC) clusters.
    • Experience in Biobank-scale research (e.g., UK Biobank, All of Us).
    • Familiarity with standard genomic tools (e.g., GATK, bcftools, samtools, PLINK, VEP, ANNOVAR).
    • Expertise in monogenic disease analysis or statistical genetics (e.g., GWAS, PheWAS, Polygenic Risk Scores).
  • Communication: Excellent written and verbal communication skills in English.

Preferred Qualifications
Posting Detail Information
Posting Number PF1027P Open Date 06/02/2026 Close Date Open Until Filled Yes Nondiscrimination Statement
UAB is an Equal Employment/Equal Educational Opportunity Institution dedicated to providing equal opportunities and equal access to all individuals regardless of race, color, religion, ethnic or national origin, sex (including pregnancy), genetic information, age, disability, religion, and veteran's status. As required by Title IX, UAB prohibits sex discrimination in any education program or activity that it operates. Individuals may report concerns or questions to UAB's Assistant Vice President and Senior Title IX Coordinator. The Title IX notice of nondiscrimination is located at uab.edu/titleix.
Special Instructions for the Position Pre-employment Background Check
A pre-employment background check investigation is performed on candidates selected for employment.
About University of Alabama at Birmingham
T o learn more about the University of Alabama at Birmingham, click here https://www.uab.edu/home/

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About University of Alabama at Birmingham

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The University of Alabama at Birmingham is the heartbeat of Birmingham and an integral medical leader in the Southeast. The Birmingham campus is within walking distance of some of the best parks, entertainment, and dining in the region. UAB's three regional campuses expand their academic reach and responsibilities in addition to educating physicians in rural and underserved areas of the state. UAB is experiencing major and sustained investment and growth, due both to its exceptional research faculty and its culture of collaboration. Through concerted and strategic investments in its clinical and research enterprise, UAB has undergone an amazing transformation in the past five years and has strengthened its status and reputation as a leader in medical training, biomedical discovery, innovation, and patient care.

Industry

Colleges, universities, and professional schools

Company size

10,000+ Employees

Headquarters location

Birmingham, AL, US

Year founded

1859

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