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Postdoctoral Research Fellowship Biomedical Data Science
The Kontorovich Laboratory, Cardiovascular Research Institute and Center for Inherited Cardiovascular Diseases
Icahn School of Medicine at Mount Sinai
We are inviting applications for a Postdoctoral Research Fellowship position in biomedical data science with a specific interest in applications to electronic health records (EHRs), genomics and cardiovascular diseases. The postdoctoral fellow will be mentored by Dr. Amy Kontorovich, Associate Professor of Medicine in Cardiology and Genomic Medicine, Cardiovascular Research Institute (CVRI) at the Icahn School of Medicine at Mount Sinai in Manhattan, New York, NY, USA. The Kontorovich Laboratory is a translational group with interlinked research interests related to genetic and genomic associations with a range of cardiovascular diseases. This Postdoctoral Research Fellowship position will focus primarily on using biomedical data science and machine learning methodologies to explore cardiovascular disease phenotypes in the Mount Sinai BioMe Biobank. The Postdoctoral Research Fellow will receive additional mentorship from Dr. Vikas Pejaver (Assistant Professor, Institute for Genomic Health at Mount Sinai), who has expertise in the extraction of genetic disease-related information from EHRs and its integration with genomic, molecular and other clinical data.
This position is funded through a five-year grant from the National Institutes of Health with additional support available to potentially extend in the longer term. The Postdoctoral Fellow will be supported to develop their own research program at the intersection of cardiovascular genetics and data science. There may be additional opportunities to work on curiosity-driven projects, such as internally-funded and structured, grant-funded projects. Data resources include (a) Access to >8 million patient records in the Mount Sinai Data Warehouse and (b) The BioMe Biobank Program with >30,000 patients with whole exome sequencing data linked to longitudinal clinical data. Mount Sinai also houses Minerva, a world-class high-performance computing resource, with specifications that include over 2 petaflops of compute cores and nearly 90 GPU cores, among others.
Requirements:
Candidate requirements include:
• PhD or MD-PhD in Biomedical Informatics, Biomedical Data Science, Clinical Research Informatics, or a related discipline
• Working knowledge of statistical testing and data exploration techniques
• Experience working in high-performance computing environments
• Experience in working with genomic and/or health record data sets
Desired qualifications include:
• Familiarity with standardized vocabularies and ontologies such as UMLS and HPO
• Working knowledge of machine learning algorithms and their implementation
• Working knowledge of natural language processing techniques including transformers and foundational models
• Working knowledge of modern web service and/or software implementation
• Familiarity with HIPAA and data governance in large healthcare systems
All candidates must have strong communication skills, a commitment to methodological rigor, and the ability to work creatively and collaboratively. Please send inquiries to amy.kontorovich@mountsinai.org with "Postdoc position" in the subject and the following materials:
• A complete CV
• A cover letter describing how your training and expertise relate to our research interests
• Contact information for at least 2 references
Information on the Postdoctoral Training Program at Mount Sinai: http://icahn.mssm.edu/education/postdoctoral-training. To learn more about the Icahn School of Medicine at Mount Sinai: http://icahn.mssm.edu.Incoming postdoctoral fellows are eligible for affordable Mount Sinai Housing within walking distance of the medical school and of a wide range of amenities as well as visa sponsorship on a case-by-case basis.
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Mount Sinai Health System is one of the largest academic medical systems in the New York metro area, with more than 48,000 employees working across eight hospitals, more than 400 outpatient practices, more than 300 labs, a school of nursing, and a leading school of medicine and graduate education. Mount Sinai advances health for all people, everywhere, by taking on the most complex health care challenges of our time - discovering and applying new scientific learning and knowledge; developing safer, more effective treatments; educating the next generation of medical leaders and innovators; and supporting local communities by delivering high-quality care to all who need it. Through the integration of its hospitals, labs, and schools, Mount Sinai offers comprehensive health care solutions from birth through geriatrics, leveraging innovative approaches such as artificial intelligence and informatics while keeping patients' medical and emotional needs at the center of all treatment. The Health System includes more than 9,000 primary and specialty care physicians; 13 joint-venture outpatient surgery centers throughout the five boroughs of New York City, Westchester, Long Island, and Florida; and more than 30 affiliated community health centers. We are consistently ranked by U.S. News & World Report's Best Hospitals, receiving high "Honor Roll" status, and are highly ranked: No. 1 in Geriatrics, top 5 in Cardiology/Heart Surgery, and top 20 in Diabetes/Endocrinology, Gastroenterology/GI Surgery, Neurology/Neurosurgery, Orthopedics, Pulmonology/Lung Surgery, Rehabilitation, and Urology. New York Eye and Ear Infirmary of Mount Sinai is ranked No. 12 in Ophthalmology. U.S. News & World Report's "Best Children's Hospitals" ranks Mount Sinai Kravis Children's Hospital among the country's best in several pediatric specialties. The Icahn School of Medicine at Mount Sinai is ranked No. 11 nationwide in National Institutes of Health funding and in the 99th percentile in research dollars per investigator according to the Association of American Medical Colleges. Newsweek's "The World's Best Smart Hospitals" ranks The Mount Sinai Hospital as No. 1 in New York and in the top five globally, and Mount Sinai Morningside in the top 20 globally.
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