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Controller Jobs in Novato, CA (NOW HIRING)

Profluent

Controller

Emeryville, CA · On-site +1

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Profluent is seeking a Controller to serve as the company's senior accounting leader and architect of its finance infrastructure at a pivotal stage of growth. This is a true builder role: you will ...

Felton Institute

Controller I

Alameda, CA · On-site

$90K - $140K/yr

  • Medical

  • Dental

  • Retirement

  • PTO

Controller I Agency Overview Felton Institute responds to the needs of our community by providing innovative, evidence-informed social services that transform lives. Our organization offers 50 ...

Felton Institute

Controller I

Alameda, CA

  • Medical

  • Dental

  • Retirement

  • PTO

Controller I Agency Overview Felton Institute responds to the needs of our community by providing innovative, evidence-informed social services that transform lives. Our organization offers 50 ...

Simbe Robotics

Controller

San Francisco, CA

The Role Simbe is hiring its first Controller to own and scale the company's accounting function. This is a hands-on leadership role for someone who can quickly take command of the monthly close ...

Simbe Robotics

Controller

San Francisco, CA · On-site

The Role Simbe is hiring its first Controller to own and scale the company's accounting function. This is a hands-on leadership role for someone who can quickly take command of the monthly close ...

Fab2

Controller

San Francisco, CA · On-site

$200K - $250K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

About the role As fab2 first dedicated accounting leader, this Controller will own the accounting function and build the financial foundations we need for our next stage of growth. This is a critical ...

AirGarage

Controller

San Francisco, CA · Remote

$200K - $250K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

THE ROLE 💼 As our Controller, you'll be the architect and owner of AirGarage's accounting function, the person who makes our numbers unimpeachable. You'll lead our in-house accounting team ...

AirGarage

Controller

San Francisco, CA · On-site +1

$200K - $250K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

THE ROLE As our Controller, you'll be the architect and owner of AirGarage's accounting function, the person who makes our numbers unimpeachable. You'll lead our in-house accounting team, modernize ...

VisiQuate, Inc.

Assistant Controller

Santa Rosa, CA · On-site

Assistant Controller Location: California: Santa Rosa, CA; Remote/ Hybrid Summary: We are seeking an experienced, hands-on Assistant Controller to support the Corporate Controller in leading the ...

VisiQuate

Assistant Controller

Santa Rosa, CA · Hybrid

Assistant Controller Location: California: Santa Rosa, CA; Remote/ Hybrid Summary: We are seeking an experienced, hands-on Assistant Controller to support the Corporate Controller in leading the ...

VisiQuate, Inc.

Assistant Controller

Santa Rosa, CA · On-site

$140K - $160K/yr

Assistant Controller Location: California: Santa Rosa, CA; Remote/ Hybrid Summary: We are seeking an experienced, hands-on Assistant Controller to support the Corporate Controller in leading the ...

Ever

Assistant Controller

San Francisco, CA · Hybrid

$165K - $200K/yr

Assistant Controller Location: San Francisco, CA (Hybrid) Department: Finance & Accounting Reports To: Controller Employment Type: Full-Time, Exempt About Ever Ever is building the modern electric ...

ProSearch Recruiting Group

Assistant Controller

Mill Valley, CA

$125K - $135K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

Assistant Controller Location: Mill Valley, CA Schedule: Fully Onsite Compensation: $125k-135k + Bonus About the Opportunity Our client, a well-established and highly respected professional services ...

VisiQuate

Assistant Controller

Santa Rosa, CA · Hybrid

Assistant Controller Location: California: Santa Rosa, CA; Remote/ Hybrid Summary: We are seeking an experienced, hands-on Assistant Controller to support the Corporate Controller in leading the ...

California Waste Solutions

Corporate Controller

Oakland, CA · On-site

$140 - $190/hr

  • Medical

  • Dental

  • Vision

  • Retirement

Description The Controller is responsible for all day-to-day accounting and financial operations of the company, financial reporting and associated record keeping functions, manages all financial ...

New

Standish Management

Fund Controller

San Francisco, CA

$90K - $115K/yr

The Fund Controller at Standish works with other team members to lead the financial reporting and administration operations of our clients. In conjunction with the Engagement Manager, the Fund ...

Gategroup

BU Controller

San Francisco, CA · On-site

$140K - $150K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Controlling * Ensure corporate policies and procedures are adhered to at Units. * Identify control weaknesses and implement cost control initiatives. * Test internal control procedures at Units and ...

Postman

Assistant Controller

San Francisco, CA

$175K - $195K/yr

Reporting to the Controller, the Assistant Controller will oversee the monthly close, lead annual audits, drive process improvements, ensure compliance with U.S. GAAP, and help scale the accounting ...

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Showing results 21-40

All JobsController JobsController Jobs in Novato, CA

Controller information

See Novato, CA salary details

$64.6K

$140.3K

$206K

How much do controller jobs pay per year?

As of Aug 15, 2026, the average yearly pay for controller in Novato, CA is $140,297.00, according to ZipRecruiter salary data. Most workers in this role earn between $113,900.00 and $162,600.00 per year, depending on experience, location, and employer.

What is a controller?

A controller is high-level accounting position in a firm or company. They often report directly to the CFO (Chief Financial Officer) and are responsible for budgets, audits, and financial reports, as well as ensuring the company complies with all tax codes and regulations.

What are some common challenges controllers face when managing financial reporting and compliance?

Controllers often encounter challenges in ensuring the accuracy and timeliness of financial reports, particularly when juggling complex transactions or multiple entities. Staying current with evolving accounting standards and regulatory requirements can also be demanding, as it requires continual learning and adaptation. Additionally, Controllers must coordinate closely with cross-functional teams, such as auditors and department heads, to address discrepancies and streamline processes, making strong communication and problem-solving skills essential.

What is the difference between Controller vs Bookkeeper?

AspectControllerBookkeeper
CredentialsTypically requires a bachelor's degree in accounting, finance, or related field; CPA or CMA certifications are commonUsually requires a high school diploma or associate degree; certifications are less common
Work EnvironmentWorks in corporate finance departments, overseeing accounting teamsWorks in small businesses or accounting firms, handling day-to-day transaction recording
ResponsibilitiesFinancial reporting, budgeting, internal controls, and strategic financial planningRecording financial transactions, maintaining ledgers, and reconciling accounts

The Controller and Bookkeeper roles differ mainly in scope and seniority. Controllers oversee financial strategies and reporting, requiring advanced credentials and experience. Bookkeepers focus on recording daily transactions and maintaining accurate records. While both are essential for financial management, Controllers have broader responsibilities and higher qualifications, often managing teams and ensuring compliance.

What are the key skills and qualifications needed to thrive as a controller, and why are they important?

To thrive as a Controller, you need a strong background in accounting principles, financial analysis, and regulatory compliance, typically supported by a bachelor's degree in accounting or finance and often a CPA certification. Proficiency with ERP systems, advanced Excel, and financial reporting software is essential for managing complex financial data. Exceptional organizational skills, attention to detail, and effective communication set top Controllers apart. These skills and qualities ensure accurate financial oversight, compliance, and strategic decision-making for organizational success.
More about Controller jobs

What are the most commonly searched types of Controller jobs in Novato, CA?

The most popular types of Controller jobs in Novato, CA are:

What are popular job titles related to Controller jobs in Novato, CA?

For Controller jobs in Novato, CA, the most frequently searched job titles are:

What job categories do people searching Controller jobs in Novato, CA look for?

The top searched job categories for Controller jobs in Novato, CA are:

What cities near Novato, CA are hiring for Controller jobs?

Cities near Novato, CA with the most Controller job openings:

Controller jobs near you
Infographic showing various Controller job openings in Novato, CA as of August 2026, with employment types broken down into 91% Full Time, 4% Part Time, 1% Temporary, and 4% Contract. Highlights an 86% In-person, 7% Hybrid, and 7% Remote job distribution, with an average salary of $140,297 per year, or $67.5 per hour.

Controller

Profluent

Emeryville, CA • On-site, Remote

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 22 days ago

Job description

Profluent is the frontier AI lab for biology. Profluent builds powerful foundation models for all of life's molecules, unlocking solutions that transform medicine, agriculture, and beyond. Founded in 2022 and headquartered in Emeryville, CA, Profluent is backed by leading investors including Altimeter Capital, Bezos Expeditions, Spark Capital, Insight Partners, Air Street Capital, AIX Ventures, and Convergent Ventures and has raised over $150M to date.
Profluent is seeking a Controller to serve as the company's senior accounting leader and architect of its finance infrastructure at a pivotal stage of growth. This is a true builder role: you will own the full accounting function, from close and financial reporting to technical accounting, equity, treasury, and compliance. You'll also be designing the systems, controls, and processes required for a future public-company operating environment.
The right candidate brings accounting experience from a high-growth company (with exposure to CRO accruals, R&D program cost tracking, and ASC 718), hands-on NetSuite (or similar) implementation or migration experience, and the technical rigor to independently research and document complex GAAP positions. You are comfortable serving as the primary interface with external auditors, capable of building an internal control framework from the ground up, and ready to lead the company's transition off QuickBooks as we scale.
Responsibilities
  • Serve as Profluent's in-house technical accounting authority; research and prepare position memos on complex transactions, new GAAP pronouncements, and company-specific accounting policy decisions
  • Executes general ledger operations, leading monthly, quarterly, and annual financial close process to ensure accurate and timely US GAAP financial statements
  • Drive R&D accounting across CRO and vendor accruals, prepaids, and program-level cost tracking, bringing structure and visibility to one of the company's largest spend categories
  • Build and deliver financial reporting packages and board-level management decks; translate financial results and key metrics into clear narratives for executive leadership and the Board
  • Own equity accounting and plan administration under ASC 718 (including stock-based compensation expense, 409A valuation support, cap table integrity, and related financial statement disclosures) in partnership with the equity platform (Carta or equivalent)
  • Design, implement, and maintain an internal control framework scaled for a high-growth tech company, balancing rigor with operational practicality as the company grows
  • Lead audit readiness and serve as the primary point of contact for external auditors; drive clean, timely delivery of annual financial statement audits
  • Manage federal, state, and local tax compliance in coordination with external advisors; lead R&D tax credit studies and other R&D-related tax matters, including Section 174 capitalization considerations
  • Establish, document, and maintain accounting infrastructure, policies and procedures that meet institutional standards and support rigorous audit and regulatory scrutiny
  • Evaluate and implement finance technology, including procure-to-pay and close management tools, to reduce manual effort, improve auditability, and strengthen data integrity at scale
  • Own cash management, banking relationships, and treasury operations, including cash forecasting and liquidity monitoring appropriate for a venture-backed company at Profluent's stage

Qualifications
  • Bachelor's degree in Accounting or Finance, active CPA license
  • 10+ years of progressive accounting experience, with at least 3 years in a Controller or senior accounting leadership role, preferably within a Big 4 or similar environment
  • Prior experience in a pre-IPO or high-growth venture-backed company environment required (e.g., biotech, tech)
  • Demonstrated experience with NetSuite, including implementation, migration, or optimization (experience migrating from QuickBooks or similar legacy system strongly preferred)
  • Hands-on experience designing and maintaining internal control frameworks
  • Strong command of U.S. GAAP; ability to independently research and document technical accounting positions
  • Experience managing external financial audits and serving as primary point of contact for auditors

Preferences
  • Experience with equity administration platforms (e.g., Carta) and ASC 718 accounting
  • Familiarity with CRO accruals, R&D capitalization policy, R&D tax credits
  • Experience with procure-to-pay platforms and ERP integrations (Coupa, Airbase, or similar)
  • SOC 2 compliance experience

What We Offer
  • High-growth opportunity with meaningful impact on the future of protein design
  • Competitive compensation package with equity participation
  • 401(k) with a strong employer match
  • Comprehensive benefits including health/dental/vision insurance
  • Generous PTO policy and commitment to work-life balance
  • Professional development opportunities in a cutting-edge field at the intersection of AI and biology

Profluent Bio, Inc is an equal opportunity employer promoting diversity and inclusion in the workspace. We do not discriminate on the basis of race, color, religion, marital status, age, national origin, ancestry, physical or mental disability, medical conditions, veteran status, sexual orientation, gender (including gender identity and gender expression), sex (which includes pregnancy, childbirth, and breastfeeding), genetic information, taking or requesting statutorily protected leave, or any other basis protected by law.
Work Authorization Requirement
Applicants must have ongoing work authorization in the United States that does not require employer sponsorship. Sponsorship will not be provided now or at any time in the future for this position.
Employment Eligibility VerificationLegal authorization to work in the United States is required. In compliance with federal law, all persons hired must verify their identity and work eligibility and complete the required employment verification form upon hire.
Hiring Salary Range
$185,000-$230,000 USD

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