... spatial transcriptomics, and ATAC-seq data. * Build, execute, and maintain reproducible computational workflows for quality control, read alignment, differential expression analysis, and data ...
... spatial transcriptomics, and ATAC-seq data. * Build, execute, and maintain reproducible computational workflows for quality control, read alignment, differential expression analysis, and data ...
... spatial transcriptomics, and ATAC-seq data. * Build, execute, and maintain reproducible computational workflows for quality control, read alignment, differential expression analysis, and data ...
... spatial transcriptomics, and ATAC-seq data. * Build, execute, and maintain reproducible computational workflows for quality control, read alignment, differential expression analysis, and data ...
Post Doctoral.Post Doctoral.Associate
Pittsburgh, PA · On-site
$47K - $64K/yr
Multi-omic profiling (scRNA-seq, ATAC-seq, spatial transcriptomics) with integrative analysis The ... Ongoing collaborations with engineering and computational groups provide opportunities to ...
Post Doctoral.Post Doctoral.Associate
Pittsburgh, PA · On-site
$47K - $64K/yr
Multi-omic profiling (scRNA-seq, ATAC-seq, spatial transcriptomics) with integrative analysis The ... Ongoing collaborations with engineering and computational groups provide opportunities to ...
... spatial transcriptomics, proteomics, cfDNA) using advanced modeling techniques. * Experience with computational pathology and AI-driven image analysis in the context of diagnostic innovation.
... spatial transcriptomics, proteomics, cfDNA) using advanced modeling techniques. * Experience with computational pathology and AI-driven image analysis in the context of diagnostic innovation.
Associate Principal Scientist, Systems Biology
West Point, PA · On-site
$142K - $224K/yr
... WES, scRNA‑seq, spatial transcriptomics, etc.). * Experience with statistical ... Fluency with experimental and/or computational methods for high‑dimensional data generation and ...
Associate Principal Scientist, Systems Biology
West Point, PA · On-site
$142K - $224K/yr
... WES, scRNA‑seq, spatial transcriptomics, etc.). * Experience with statistical ... Fluency with experimental and/or computational methods for high‑dimensional data generation and ...
... spatial transcriptomics, etc). * Demonstrated experience with statistical hypothesis testing ... Fluency with experimental and/or computational methods for generating and interrogating high ...
... spatial transcriptomics, etc). * Demonstrated experience with statistical hypothesis testing ... Fluency with experimental and/or computational methods for generating and interrogating high ...
Candidates must be proficient in advanced statistical and computational methods and have a solid ... Familiarity with spatial transcriptomics is a plus. The successful applicant will have an ...
Candidates must be proficient in advanced statistical and computational methods and have a solid ... Familiarity with spatial transcriptomics is a plus. The successful applicant will have an ...
... spatial transcriptomics, etc). * Experience with statistical hypothesis testing methodology and ... Fluency with experimental and/or computational methods for generating and interrogating ...
... spatial transcriptomics, etc). * Experience with statistical hypothesis testing methodology and ... Fluency with experimental and/or computational methods for generating and interrogating ...
... spatial transcriptomics, etc). * Demonstrated experience with statistical hypothesis testing ... Fluency with experimental and/or computational methods for generating and interrogating high ...
... spatial transcriptomics, etc). * Demonstrated experience with statistical hypothesis testing ... Fluency with experimental and/or computational methods for generating and interrogating high ...
Translational Post Doctoral Researcher - Agentic AI for Neurodegeneration
Spring House, PA · On-site +1
$110K/yr
Post Doc - Data Analytics & Computational Sciences Job Category: Career Program All Job Posting ... spatial resolution, temporal scale, and dimensionality - into unified analytical frameworks
Translational Post Doctoral Researcher - Agentic AI for Neurodegeneration
Spring House, PA · On-site +1
$110K/yr
Post Doc - Data Analytics & Computational Sciences Job Category: Career Program All Job Posting ... spatial resolution, temporal scale, and dimensionality - into unified analytical frameworks
Translational Post Doctoral Researcher - Agentic AI for Neurodegeneration
Spring House, PA · On-site +1
$110K/yr
Post Doc - Data Analytics & Computational Sciences Job Category: Career Program All Job Posting ... spatial resolution, temporal scale, and dimensionality - into unified analytical frameworks
Translational Post Doctoral Researcher - Agentic AI for Neurodegeneration
Spring House, PA · On-site +1
$110K/yr
Post Doc - Data Analytics & Computational Sciences Job Category: Career Program All Job Posting ... spatial resolution, temporal scale, and dimensionality - into unified analytical frameworks
Computational Spatial Transcriptomics information
What are some typical challenges faced when working in computational spatial transcriptomics, and how can new team members prepare for them?
What is the difference between Computational Spatial Transcriptomics vs Computational Biologist?
| Aspect | Computational Spatial Transcriptomics | Computational Biologist |
|---|---|---|
| Required Credentials | Advanced degrees in bioinformatics, computational biology, or related fields; experience with spatial data analysis | Typically a PhD or Master's in biology, bioinformatics, or related disciplines; strong programming skills |
| Work Environment | Research labs, biotech companies, academic institutions focusing on spatial genomics | Research institutions, biotech firms, academia working on biological data analysis |
| Industry Usage | Specialized in spatial transcriptomics techniques and data interpretation | Broad biological data analysis across various fields |
Computational Spatial Transcriptomics focuses on analyzing spatial gene expression data within tissues, requiring specialized skills in spatial data processing. In contrast, Computational Biologists work on a wider range of biological data types. While both roles involve bioinformatics expertise, the former emphasizes spatial data analysis techniques specific to transcriptomics.
What is computational spatial transcriptomics?
What are the key skills and qualifications needed to thrive as a Computational Spatial Transcriptomics Scientist, and why are they important?
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Research Associate - Mellon College of Science - Biological Sciences
Pittsburgh, PA • On-site
Part-time
Medical, Dental, Vision, Life, Retirement, PTO
Posted 28 days ago
Carnegie Mellon University rating
8.6
Based on 24 frontline employees who took The Breakroom Quiz
56th of 553 rated colleges and universities
Job description
The Mellon College of Science (MCS) is home to four departments and many programs and research centers that cross disciplines. We approach scientific problems from fresh angles using creative interdisciplinary approaches while drawing on our departmental strengths in the core sciences. MCS faculty members are nationally and internationally recognized for their research in a variety of fields, including polymer science, cosmology, mathematical finance, and neuroscience.
Our Biological Sciences department is seeking a Research Associate to join the team! In this role, you will support biology research projects involving molecular biology, cell biology, genomics, transcriptomics, and computational biology. This position will contribute to both wet-lab experimental workflows and bioinformatics analysis of high-throughput sequencing datasets
Core Responsibilities
- Perform molecular biology and genomics-related laboratory procedures according to established protocols, including sample preparation, nucleic acid extraction, PCR-based assays, protein assays, cell culture support, bacterial culture, plasmid preparation, and related experimental workflows.
- Assist with animal and tissue-based research workflows, including mouse model support, mouse dissection, tissue collection, sample labeling and storage, and coordination of downstream molecular assays.
- Process, analyze, and interpret high-throughput sequencing datasets, including RNA-seq, Ribo-seq, single-cell RNA-seq, spatial transcriptomics, and ATAC-seq data.
- Build, execute, and maintain reproducible computational workflows for quality control, read alignment, differential expression analysis, and data visualization.
- Generate figures, tables, written summaries, and presentation materials for laboratory meetings, research reports.
- Maintain accurate and detailed records of experimental procedures, sequencing datasets, analysis scripts, computational results, and project documentation.
- Communicate research progress, technical issues, and analysis results clearly to supervisors and collaborators.
- Collaborate with faculty, postdoctoral researchers, graduate students, and other laboratory staff on interdisciplinary research projects.
- Support sequencing analysis related to gene expression and translational regulation.
- Analyze single-cell datasets to characterize cell populations and disease-related features.
- Develop and maintain reproducible analysis pipeline using R and Python.
- Use bioinformatics tools and computing environments such as IGV, Linux/Unix, and related software.
Adaptability, excellence, and passion are vital qualities within Carnegie Mellon University. We are in search of a team member who can effectively interact with a varied population of internal and external partners at a high level of integrity. We are looking for someone who shares our values and who will support the mission of the university through their work.
Qualifications:
- Bachelor's degree in Bioinformatics, Quantitative Biology, Biotechnology, Molecular Biology, Genetics, or a related field required. Master's degree preferred.
- 1-3 years of research experience in a laboratory in bioinformatics, computational biology, genomics, or related biology research.
- Research experience involving wet-lab molecular biology, cell biology techniques and bioinformatics analysis of high-throughput sequencing data, such as RNA-seq, single-cell RNA-seq, spatial transcriptomics, Ribo-seq, ATAC-seq, or alternative splicing analysis.
- Training or certification in laboratory safety, biosafety, and animal research is preferred.
- A combination of education and proven experience from which comparable knowledge is demonstrated may be considered.
Requirements:
- Successful completion of a pre-employment background check
Joining the CMU team opens the door to an array of exceptional benefits.
Benefits eligible employees enjoy a wide array of benefits including comprehensive medical, prescription, dental, and vision insurance as well as a generous retirement savings program with employer contributions. Unlock your potential with tuition benefits, take well-deserved breaks with ample paid time off and observed holidays, and rest easy with life and accidental death and disability insurance.
Additional perks include a free Pittsburgh Regional Transit bus pass, access to our Family Concierge Team to help navigate childcare needs, fitness center access, and much more!
For a comprehensive overview of the benefits available, explore our Benefits page.
At Carnegie Mellon, we value the whole package when extending offers of employment. Beyond credentials, we evaluate the role and responsibilities, your valuable work experience, and the knowledge gained through education and training. We appreciate your unique skills and the perspective you bring. Your journey with us is about more than just a job; it's about finding the perfect fit for your professional growth and personal aspirations.
Are you interested in an exciting opportunity with an exceptional organization?! Apply today!
Location
Pittsburgh, PA
Job Function
Researchers
Position Type
Staff - Fixed Term (Fixed Term)
Full Time/Part time
Part time
Pay Basis
Hourly
More Information:
- Please visit "Why Carnegie Mellon" to learn more about becoming part of an institution inspiring innovations that change the world.
- Click here to view a listing of employee benefits
- Carnegie Mellon University is an Equal Opportunity Employer/Disability/Veteran.
- Statement of Assurance
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