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Computational Protein Structure Prediction Jobs

Senior AI Protein Engineer

Los Angeles, CA · On-site

$112K - $154K/yr

D. in Computational Protein Design, Structural Biology, Bioinformatics, or a related field. - 5+ years of hands-on experience in macromolecular modeling and sequence/structure prediction. -Technical ...

As a Computational Biologist you work at the front of that: the models, the sequences, and the ... De novo protein design, structure prediction, molecular dynamics, machine learning on biological ...

New

As a Computational Biologist you work at the front of that: the models, the sequences, and the ... De novo protein design, structure prediction, molecular dynamics, machine learning on biological ...

New

$120K - $140K/yr

Computational Protein Design * Apply structure prediction and modeling to engineer therapeutic and tool proteins (e.g. editors, nucleases, capsids, regulatory elements). * Optimize variants for ...

... computational-experimental loop, and represent Lila's work to the broader scientific community. What You'll Be Building * Drive research on structure prediction and co-folding models for protein ...

Showing results 21-40

Computational Protein Structure Prediction information

What is the difference between Computational Protein Structure Prediction vs Molecular Dynamics Simulation?

AspectComputational Protein Structure PredictionMolecular Dynamics Simulation
Primary FocusPredicting 3D protein structures from amino acid sequencesSimulating physical movements of molecules over time
Required SkillsBioinformatics, structural biology, programmingPhysics, chemistry, computational modeling
Work EnvironmentResearch labs, biotech companies, academiaResearch labs, pharmaceutical industry, academia
Common UsageStructure prediction, drug design, functional annotationUnderstanding protein dynamics, stability, interactions

Computational Protein Structure Prediction focuses on determining the 3D structure of proteins based on their amino acid sequences, essential for understanding function and drug design. Molecular Dynamics Simulation, on the other hand, models the physical movements of molecules over time to study stability and interactions. Both roles require strong computational skills and are used extensively in research and industry, but they serve different purposes within structural biology.

What other helpful pages are available for Computational Protein Structure Prediction?

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Infographic showing various Computational Protein Structure Prediction job openings in the United States as of September 2026, with employment types broken down into 1% Internship, 84% Full Time, 12% Part Time, and 3% Contract. Highlights an 53% Physical, 2% Hybrid, and 45% Remote job distribution.

AI Scientist Intern, Computational Protein Design

Seattle, WA

$10K - $15K/mo

Internship

Posted 15 days ago


Job description

About the Role

As an AI Scientist Intern on our Computational Protein Design team, you will work alongside talented scientists and engineers developing generative AI models for protein and antibody therapeutic design. During your internship, you will contribute to advancing state-of-the-art machine learning models for biology, with a focus on impacting protein/antibody design and drug discovery. You will also have the opportunity to collaborate with interdisciplinary experts in biology, drug discovery, and clinical research.

Responsibilities

  • Develop and apply deep learning methods for protein/antibody structure, sequence, or property modeling, under the guidance and mentorship of experienced scientists and engineers
  • Implement and train models on GPUs using PyTorch
  • Contribute to ongoing research projects involving protein structure, sequence, or biophysical/affinity datasets
  • Participate in discussions to help generate innovative ideas for advancing AI methodologies in computational protein design
  • Document findings and communicate progress effectively to peers and mentors

Qualifications

  • Currently pursuing a MS or PhD in Computer Science, Machine Learning, or a related technical field, with strong publication record
  • Hands-on experience with PyTorch and training/inference of AI models on GPUs
  • Strong interest in AI innovation and its applications to interdisciplinary fields such as biology and chemistry
  • Extensive hands-on experience with deep learning methods and frameworks
  • Ability to work collaboratively in a team environment and learn from experienced mentors
  • A scientifically curious mindset with a passion for exploring new challenges
  • Experience with large-scale distributed training and inference is a plus
  • Exposure to molecular structure or biological sequence data or computational biology/bioinformatics is a plus, but not required
  • Prior research experience demonstrated through publications and/or significant open source code authorship
  • Interest in contributing to open-source deep learning libraries and frameworks is a plus

Internship Duration
3 months
The expected monthly compensation range is $10,000-$15,000, depending on experience and qualifications. We are open to higher compensation for candidates with exceptional experience or impact. This internship is designed to provide a unique learning experience, offering hands-on exposure to the intersection of AI and computational protein design while allowing you to contribute meaningfully to real-world projects.