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Clinical Systems Engineer Jobs in New York (NOW HIRING)

Stem Xpert

Senior Software Systems Engineer

Warren, NJ · On-site

$65/hr

... non-IT) in the Technology, Engineering, Clinical, Legal, Scientific, Finance, Marketing ... Senior Software Systems Engineer Location: Warren ,NJ Duration : 8 months Pay Rate: $65 Hr W-2 ...

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All JobsClinical Systems Engineer JobsClinical Systems Engineer Jobs in New York

Clinical Systems Engineer information

See New York salary details

$44.3K

$102.5K

$148.8K

How much do clinical systems engineer jobs pay per year?

As of Sep 7, 2026, the average yearly pay for clinical systems engineer in New York is $102,511.00, according to ZipRecruiter salary data. Most workers in this role earn between $76,600.00 and $119,800.00 per year, depending on experience, location, and employer.

What does a clinical systems engineer do?

A Clinical Systems Engineer is responsible for managing and optimizing healthcare technology systems, ensuring they function safely and efficiently. They work with medical devices, electronic health record (EHR) systems, and IT infrastructure to improve clinical workflows. Their role involves troubleshooting, integrating new technologies, ensuring compliance with regulations, and collaborating with clinicians and IT teams to enhance patient care.

What are the key skills and qualifications needed to thrive as a clinical systems engineer?

To excel as a Clinical Systems Engineer, you need a strong background in biomedical engineering, information systems, and familiarity with healthcare regulations, usually supported by a relevant degree. Experience with medical device integration, clinical IT systems (such as PACS, EHRs), and certifications like CCE or CBET are highly valuable. Strong problem-solving, communication skills, and the ability to train or support clinical staff set candidates apart in this role. These abilities are crucial for ensuring that healthcare technology is implemented safely, efficiently, and in full compliance with regulatory standards.

What are popular job titles related to Clinical Systems Engineer jobs in New York?

For Clinical Systems Engineer jobs in New York, the most frequently searched job titles are:

What job categories do people searching Clinical Systems Engineer jobs in New York look for?

The top searched job categories for Clinical Systems Engineer jobs in New York are:

Clinical Systems Engineer jobs near you
Infographic showing various Clinical Systems Engineer job openings in New York as of August 2026, with employment types broken down into 1% As Needed, 88% Full Time, 7% Part Time, 3% Contract, and 1% Nights. Highlights an 89% Physical, 3% Hybrid, and 8% Remote job distribution, with an average salary of $102,511 per year, or $49.3 per hour.

M365 Systems Engineer/ Systems Administrator III

JS Consulting

Jersey City, NJ • On-site

Contractor

Re-posted 17 days ago

Job description

Job Title- M365 Systems Engineer/ Systems Administrator III

Project Location – Remote

Duration- 6+ months contract

Visa- USC/ GC/ GCEAD

M365 Systems Engineer/ Systems Administrator III (Healthcare)

About the Role

We are partnering with a healthcare organization seeking an experienced Microsoft 365 Systems Engineer / Systems Administrator III to support, maintain, and optimize their enterprise Microsoft 365 environment. This role will play a critical part in ensuring system reliability, security, and compliance while supporting clinical and business operations across the organization.

The ideal candidate brings strong hands-on experience with M365 administration, a solid understanding of healthcare IT environments, and the ability to operate independently in a fully remote setting.

Key Responsibilities

  • Administer, configure, and support the Microsoft 365 ecosystem, including Exchange Online, SharePoint Online, OneDrive, Teams, and Entra ID (Azure AD)
  • Manage user identities, access controls, security groups, and conditional access policies
  • Monitor system performance, availability, and security, proactively identifying and resolving issues
  • Support email security, data loss prevention (DLP), retention policies, and eDiscovery
  • Collaborate with security and compliance teams to ensure adherence to HIPAA and healthcare IT standards
  • Implement and maintain endpoint management solutions using Intune / Endpoint Manager
  • Provide Tier 3 support and escalation for complex M365 and identity-related issues
  • Participate in system upgrades, migrations, and M365 feature rollouts
  • Create and maintain technical documentation, runbooks, and standard operating procedures
  • Work closely with cross-functional IT teams to support clinical and administrative users

Required Qualifications

  • 5+ years of experience as a Systems Administrator or Systems Engineer, with a strong focus on Microsoft technologies
  • Hands-on experience administering Microsoft 365 in an enterprise environment
  • Strong knowledge of Exchange Online, SharePoint Online, Teams, OneDrive, and Entra ID (Azure AD)
  • Experience with Intune / MDM / endpoint management
  • Solid understanding of identity and access management (IAM) concepts
  • Familiarity with PowerShell for automation and administrative tasks
  • Experience working in a healthcare or regulated environment
  • Strong troubleshooting, communication, and documentation skills
  • Ability to work independently in a fully remote role during EST business hours

Preferred Qualifications

  • Prior experience supporting healthcare organizations or clinical systems
  • Knowledge of HIPAA compliance, security controls, and audit readiness
  • Microsoft certifications such as MS-102, MD-102, or related M365 certifications
  • Experience with security tools such as Microsoft Defender, Conditional Access, and DLP policies
  • Exposure to hybrid environments (on-prem Active Directory + Azure AD)