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Chemistry Software Jobs in California (NOW HIRING)

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Chemistry Software information

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$13

$21

$31

How much do chemistry software jobs pay per hour?

As of Sep 7, 2026, the average hourly pay for chemistry software in California is $21.96, according to ZipRecruiter salary data. Most workers in this role earn between $18.03 and $24.18 per hour, depending on experience, location, and employer.

What is a chemistry software?

A Chemistry Software job involves developing, maintaining, and optimizing software applications used in chemistry-related fields. Professionals in this role may work on molecular modeling, data analysis, simulation tools, or laboratory automation. They often collaborate with chemists, researchers, and engineers to create software that aids in chemical research, drug discovery, materials science, or educational tools. Strong programming skills, knowledge of chemistry principles, and experience with scientific computing are typically required.

What does a chemistry software do?

Professionals in Chemistry Software roles often spend their days developing or maintaining software tools used for chemical modeling, analysis, or simulation. They might collaborate with chemists to understand research needs, implement new computational features or algorithms, troubleshoot software bugs, and document technical details for users. Team meetings and code reviews are common, as is working with interdisciplinary teams of scientists, engineers, and IT specialists. This dynamic environment offers regular opportunities to apply both scientific and technical problem-solving skills.

What are the key skills and qualifications needed to thrive in the chemistry software position, and why are they important?

To thrive in a Chemistry Software role, you need a strong background in chemistry, computational science, and software development, usually supported by a degree in chemistry, computer science, or a related field. Familiarity with scientific programming languages (such as Python or C++), molecular modeling software, and possibly certifications in data science or cheminformatics is highly valued. Excellent problem-solving, communication, and teamwork skills help professionals succeed in cross-functional scientific environments. These skills are essential for accurately translating chemical concepts into robust software solutions and facilitating effective collaboration between scientists and developers.

Do chemistry software make good money?

Chemistry software roles, such as software developers or specialists working on chemical modeling tools, can offer competitive salaries depending on experience, education, and location. Professionals with programming skills and knowledge of chemistry often earn higher wages, especially in research, development, or industry settings.

What are 5 potential jobs for chemistry software?

Potential jobs for chemistry software include computational chemist, chemical data analyst, software developer for chemical applications, laboratory informatics specialist, and cheminformatics scientist. These roles often require knowledge of chemistry, programming skills, and experience with specialized software tools such as molecular modeling or data management systems.
Infographic showing various Chemistry Software job openings in California as of August 2026, with employment types broken down into 88% Full Time, 10% Part Time, and 2% Contract. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $45,686 per year, or $22 per hour.

Staff Scientist II - Medicinal Chemistry

Protagonist Therapeutics Inc.

Newark, CA • On-site

$135K - $145K/yr

Full-time

Re-posted 11 days ago


Job description

Staff Scientist II - Medicinal Chemistry
The discovery chemistry team at Protagonist Therapeutics is seeking a highly motivated Staff Scientist II for a full-time small molecule medicinal chemist position. It is a full-time, hands-on bench scientist position, but the individual will have the opportunity to co-lead discovery projects under supervision. The individual will be responsible for design and synthesis of new molecules, solving challenging problems with critical thinking within our multi-disciplinary drug discovery team. The individual will have the opportunity to manage external chemistry resources and provide technical support to ensure high productivity. The individual will have a good track record and be enthusiastic about drug discovery. The individual independently supports multiple research programs and possesses excellent verbal and written communication skills. This individual will report to the Senior Director of Chemistry.
Key responsibilities:
• Propose and synthesize new molecular targets based on structure-activity relationships for compound optimization to advance leads
• Design synthetic routes based on up-to-date literature and hands-on past experience, scale up experience is required
• Solve challenging synthetic problems using various techniques
• Lead and/or assist in writing and revising technical documents including synthetic, analytical protocols and data reports
• Analyze, interpret, summarize, communicate results and data to the team through presentations or other formats in a timely manner
• Provide synthetic chemistry expertise and support cross-functional activities as needed
• Be up to date with scientific literature
• Work with external CROs to manage FTEs and outsourcing activities
• Organize the lab, maintain instruments, reagents, supplies in daily operations and follow EH&S rules and regulations
Requirements:
• PhD in Synthetic Organic Chemistry/Medicinal Chemistry with 2-5 yeas of industrial experience in medicinal chemistry
• Proficiency in the following aspects: small molecule target design, organic synthesis and purification, scale up, problem solving, troubleshooting
• Understanding of the biology related to various drug discovery projects
• Proficiency with software such as Microsoft Office, ChemDraw and SciFinder and ability to use computational chemistry software to design molecules
• Experience with electronic notebook, Spotfire and other data management and uploading software is a plus
• Excellent time management skills, organizational skills, high efficiency in the lab, ability to adjust work priorities per project needs, and detailed record keeping of experiments using electronic lab notebooks in a timely manner
• Ability to develop new skillsets and knowledge is highly desirable
• Working independently with limited guidance and multi-tasking are crucial for success
• Ability to collaborate within the team and cross-function in a dynamic and fast-paced environment
• Strong verbal and written communication skills
The base pay range for this position at commencement of employment is expected to be between $135,000 and $145,000/year; however, base pay offered may vary depending on multiple individualized factors, including market location, job-related knowledge, skills, and experience.
Protagonist Therapeutics is a discovery through late-stage development biopharmaceutical company. The Company's proprietary peptide technology platform enables de novo discovery of peptide therapeutics. Two novel peptides derived from Protagonist's proprietary discovery platform are at or near commercialization. ICOTYDE™ (icotrokinra) is approved in the U.S. for the treatment of moderate-to-severe plaque psoriasis in adults and pediatric patients 12 years of age and older who weigh at least 40 kg who are candidates for systemic therapy or phototherapy. ICOTYDE is the first and only targeted oral peptide that precisely blocks the Interleukin-23 receptor (IL-23R) licensed to Janssen Biotech, Inc.,a Johnson & Johnson company. ICOTYDE was jointly discovered by Protagonist and Johnson & Johnson scientists, with Protagonist having primary responsibility for the development of ICOTYDE through Phase 1, and Johnson & Johnson assuming responsibility for further development and commercialization. An NDA for rusfertide, a first-in-class hepcidin mimetic peptide that is being co-developed with Takeda Pharmaceuticals pursuant to a worldwide license and collaboration agreement entered in 2024, is under priority review with the FDA. Protagonist holds an option to co-commercialize rusfertide in the U.S. through a 50/50 profit and loss share structure or can opt-out of this structure. The Company also has a number of preclinical stage drug discovery programs addressing clinically and commercially validated targets including an oral IL-17 peptide antagonist, obesity dual and triple agonists, an oral hepcidin functional mimetic, and the recently announced IL-4 and amylin programs.
More information on Protagonist, its pipeline drug candidates, and clinical studies can be found on the Company's website at https://www.protagonist-inc.com.