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Biomedical Data Engineer Jobs in Boston, MA (NOW HIRING)

Senior Staff Product Manager, Workbench

Boston, MA · On-site

$137K - $181K/yr

Bachelor's degree in Computer Science, Engineering, a related technical field, or equivalent ... Deep experience with Trusted Research Environments (TREs), biomedical data analysis, or healthcare ...

Senior Quality Engineer

Billerica, MA · On-site

$94K - $127K/yr

Nova Biomedical: One Global Brand. One Vision. Together under one name. Advanced Instruments and ... Analyze data and generate reports to identify trends and to draw effective conclusions. * Generate ...

Senior Quality Engineer

Billerica, MA

$94K - $127K/yr

Nova Biomedical: One Global Brand. One Vision. Together under one name. Advanced Instruments and ... Analyze data and generate reports to identify trends and to draw effective conclusions. * Generate ...

Senior Quality Engineer

Norwood, MA

$100K - $135K/yr

Nova Biomedical: One Global Brand. One Vision. Together under one name. Advanced Instruments and ... Analyze data and generate reports to identify trends and to draw effective conclusions. * Generate ...

Sr. Automation Control Engineer

Waltham, MA · On-site

$112K - $147K/yr

Nova Biomedical is building its next generation of automation capabilities across multiple ... Own and execute connections between equipment and supervisory/data systems, including SCADA/AVEVA ...

Senior Quality Engineer

Norwood, MA

$100K - $135K/yr

Nova Biomedical: One Global Brand. One Vision. Together under one name. Advanced Instruments and ... Analyze data and generate reports to identify trends and to draw effective conclusions. * Generate ...

Showing results 21-40

Biomedical Data Engineer information

See Boston, MA salary details

$17

$68

$95

How much do biomedical data engineer jobs pay per hour?

As of Sep 12, 2026, the average hourly pay for biomedical data engineer in Boston, MA is $68.42, according to ZipRecruiter salary data. Most workers in this role earn between $58.22 and $77.02 per hour, depending on experience, location, and employer.

What is a biomedical data engineer?

A Biomedical Data Engineer is a professional who designs, develops, and maintains systems for collecting, storing, and analyzing biomedical data. They work at the intersection of healthcare and technology, collaborating with researchers, clinicians, and IT specialists to ensure that medical data is accessible, accurate, and secure. Their work supports medical research, diagnostics, and the development of healthcare solutions by leveraging large datasets, machine learning, and advanced analytics. Biomedical Data Engineers often use programming languages, database management, and data processing tools to handle complex health data from various sources.

What are the key skills and qualifications needed to thrive as a biomedical data engineer, and why are they important?

To thrive as a Biomedical Data Engineer, you need strong programming skills (e.g., Python, R), a background in biomedical sciences or bioinformatics, and experience with data modeling and analysis. Familiarity with big data frameworks, cloud platforms, and tools like SQL, Hadoop, and machine learning libraries, as well as relevant certifications, is commonly required. Excellent problem-solving abilities, attention to detail, and effective collaboration with cross-functional teams help you stand out in this role. These skills enable accurate analysis and integration of complex biomedical data, supporting critical healthcare research and innovation.

What are some common challenges faced by biomedical data engineers when integrating clinical data from multiple sources?

Biomedical Data Engineers often encounter challenges related to data heterogeneity when integrating clinical information from diverse sources such as electronic health records, medical imaging systems, and genomic databases. These sources may use different formats, standards, and terminologies, making data cleaning and normalization a complex task. Additionally, ensuring patient privacy and compliance with healthcare regulations adds another layer of complexity. Collaborating with clinicians, data scientists, and IT teams is essential to address these challenges and ensure data is usable for research and decision-making.

What is the difference between Biomedical Data Engineer vs Biomedical Data Analyst?

AspectBiomedical Data EngineerBiomedical Data Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; experience with data engineering toolsBachelor's or Master's in Biology, Bioinformatics, or related fields; proficiency in data analysis and visualization
Work EnvironmentDevelops data pipelines, manages databases, and ensures data infrastructure for research and healthcareAnalyzes datasets, creates reports, and interprets data for research or clinical decision-making
Employer & Industry UsageResearch institutions, biotech companies, healthcare providersHospitals, research labs, biotech firms, healthcare organizations

While both roles work with biomedical data, Biomedical Data Engineers focus on building and maintaining data infrastructure, whereas Biomedical Data Analysts interpret and analyze data to support research and clinical decisions.

What are popular job titles related to Biomedical Data Engineer jobs in Boston, MA?

For Biomedical Data Engineer jobs in Boston, MA, the most frequently searched job titles are:

What job categories do people searching Biomedical Data Engineer jobs in Boston, MA look for?

The top searched job categories for Biomedical Data Engineer jobs in Boston, MA are:

What cities near Boston, MA are hiring for Biomedical Data Engineer jobs?

Cities near Boston, MA with the most Biomedical Data Engineer job openings:

Infographic showing various Biomedical Data Engineer job openings in Boston, MA as of September 2026, with employment types broken down into 1% Internship, 1% As Needed, 82% Full Time, 12% Part Time, and 4% Contract. Highlights an 86% Physical, 3% Hybrid, and 11% Remote job distribution, with an average salary of $142,319 per year, or $68.4 per hour.

Team Leader in Data Science, Disease Area X

Cambridge, MA • On-site

Novartis Pharmaceuticals Corporation
10K+ employees

Full-time

Medical, Life, Retirement, PTO

Re-posted 21 days ago


Key responsibilities

  • Lead data science strategy and execution for hypothesis-driven discovery programs, including study design, analysis of experiments, and interpretation of complex biological datasets.

  • Drive multi-omics analytics across genomics, transcriptomics, proteomics, single-cell, spatial, imaging, clinical, and other relevant data modalities to support target and biomarker portfolios.

  • Partner cross-functionally with wet-lab scientists, translational researchers, platform teams, and senior stakeholders to shape experimental design and accelerate decision-making.


Job description

Band

Level 5


Job Description Summary

The Team Leader in Data Science, Disease Area X at Novartis will lead and contribute to high-impact data science programs that transform complex biological, translational, and multi-omics data into decision-driving insights for drug discovery. This role will combine scientific leadership, hands-on computational expertise, and people leadership to advance target identification, biomarker discovery, mechanism-of-action understanding, and portfolio decisions.
The successful candidate will lead a multidisciplinary team of data scientists and partner closely with biology, translational research, data sciences, IT, and discovery platform teams. They will help define and operationalize AI/ML strategy for discovery applications, including generative and agentic AI. This leader will also contribute significantly to data generation, curation, and engineering strategies that enable scalable use of proprietary and public datasets. The role reports to the Head of Data Science, Disease Area X.


Job Description

Internal Job Title: Senior Principal Scientist or Associate Director

Position Location: Cambridge, MA Hybrid

Key responsibilities:

  • Lead data science strategy and executionfor hypothesis-driven discovery programs, including study design, analysis of experiments, and interpretation of complex biological datasets.

  • Drive multi-omics analyticsacross genomics, transcriptomics, proteomics, single-cell, spatial, imaging, clinical, and other relevant data modalities to support target and biomarker portfolios.

  • Translate scientific questions into computational strategies, selecting fit-for-purpose statistical, machine learning, AI, and bioinformatics approaches.

  • Operationalize responsible use of generative and/or agentic AI tools in drug discovery workflows, ensuring scientific rigor, data governance, and appropriate human oversight.

  • Contribute hands-on technical workin scientific software development, data engineering, workflow automation, reproducible analysis, and scalable analytical pipelines.

  • Partner cross-functionallywith wet-lab scientists, translational researchers, platform teams, and senior stakeholders to shape experimental design and accelerate decision-making.

  • Prioritize resources and capabilitiesacross multiple projects, adapting to evolving portfolio needs and balancing strategic impact with delivery timelines.

  • Lead, coach, and develop direct reports, creating a collaborative, inclusive, scientifically rigorous, and high-performing team environment.

  • Communicate scientific findings and recommendationsclearly through internal presentations, governance discussions, publications, posters, and external scientific forums.

  • Promote FAIR data practices, reproducible research, high-quality documentation, project tracking, and scalable analytical standards across the team.

Essential Requirements:

  • Advanced degree (PhD preferred) in Data Science, Computational Biology, Bioinformatics, Computational Science, Molecular Biology, Genetics, Biochemistry, Engineering, or a related quantitative or life sciences discipline.

  • 6+ years of relevant experience applying computational biology, bioinformatics, AI/ML, statistics, or data science to drug discovery, translational research, biotechnology, pharmaceutical R&D, technology, or academic research.

  • Experience leading or managing internal data scientists, computational biologists, bioinformaticians, or machine learning scientists in a matrix management environment as well as external collaborators

  • Demonstrated ability to lead complex, hypothesis-driven scientific analyses using biological, multi-omics, or translational datasets, including RNA-seq, single-cell RNA-seq, proteomics, genomics, spatial biology, and/or imaging.

  • Strong practical experience with scientific software development, reproducible analysis, workflow orchestration and collaborative development practices; experience in Python and/or R, with familiarity in tools such as GitHub, HuggingFace, workflow managers, Jupyter notebooks, containers

  • Deep experience with cloud-based or enterprise-scale compute platforms, high-performance computing

  • Significant experience influencing and collaborating across diverse scientific teams, including wet-lab biology, translational research, engineering, and computational functions.

  • Familiarity with modern AI/ML methods and their application to biological or biomedical data (i.e. generative, agentic AI)

  • Experience acquiring, curating, and engineering proprietary and public datasets while maintaining appropriate data governance, privacy, and security standards.

  • Demonstrated ability to shape scientific strategy cross-functionally, influence senior stakeholders, and translate analytical results into portfolio-relevant decisions.

  • Track record of scientific impact through publications, conference presentations, internal decision support, or portfolio contributions.

  • Strong communication, interpersonal, ethical judgment, resilience, and self-awareness skills.

Compensation & Benefits:

The salary for this position is expected to range between $160,300 and $297,700 USD annually for Senior Principal Scientist, Data Science, and $176,400 and $327,600 USD annually for Associate Director, Data Science. The final salary offered is determined based on factors like, but not limited to, relevant skills andexperience, and upon joining Novartis will be reviewed periodically. Novartis may change the publishedsalary range based on company and market factors.


Your compensation will include a performance-based cash incentive and, depending on the level of therole, eligibility to be considered for annual equity awards.


US-based eligible employees will receive a comprehensive benefits package that includes health, life anddisability benefits, a 401(k) with company contribution and match, and a variety of other benefits. Inaddition, employees are eligible for a generous time off package including vacation, personal days,holidays and other leaves.


To learn more about the culture, rewards and benefits we offer our people click here.


EEO Statement:

The Novartis Group of Companies are Equal Opportunity Employers. We do not discriminate in recruitment, hiring, training, promotion or other employment practices for reasons of race, color, religion, gender, national origin, age, sexual orientation, gender identity or expression, marital or veteran status, disability, or any other legally protected status. We strive to create an inclusive workplace that cultivates bold innovation through collaboration and empowers our people to unleash their full potential.


Accessibility and reasonable accommodations

The Novartis Group of Companies are committed to working with and providing reasonable accommodation to individuals with disabilities. If, because of a medical condition or disability, you need a reasonable accommodation for any part of the application process, or in order to perform the essential functions of a position, please send an e-mail to tas.nacomms@novartis.com call +1 (877)395-2339 and let us know the nature of your request and your contact information. Please include the job requisition number in your message.
https://www.novartis.com/careers/careers-research/notice-all-applicants-us-job-openings


Salary Range

$160,300.00 - $297,700.00


Skills Desired

Artificial Intelligence (AI), Biostatistics, Business Value Creation, Change Management, Curious Mindset, Data Governance, Data Literacy, Data Quality, Data Science, Data Visualization, Deep Learning, Graph Algorithms, Learning Agility, Machine Learning (ML), Machine Learning Algorithms, Python (Programming Language), Stakeholder Engagement, Statistical Analysis, Time Series Analysis