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Bioinformatics Programmer Analyst Jobs in Watertown, MA

AstraZeneca

Senior Scientist, Bioinformatics

Waltham, MA · On-site +1

Experience with programming and data analysis in languages such as R and/or Python, and familiarity ... bioinformatics, AI, or data science. How we do it At AstraZeneca,we'rededicated to being a Great ...

micro1 AI

Bioinformatics Software Engineer

Lynn, MA · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

micro1 AI

Bioinformatics Software Engineer

Quincy, MA · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

micro1 AI

Bioinformatics Software Engineer

Cambridge, MA · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

micro1 AI

Bioinformatics Software Engineer

Lowell, MA · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

micro1 AI

Bioinformatics Software Engineer

Boston, MA · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

micro1 AI

Bioinformatics Software Engineer

Brockton, MA · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

Watershed Informatics

Software Engineer

Boston, MA

Watershed enables scientists to conduct all essential analysis - from lab data to plot - with a single software platform. We have attracted some of the best bioinformatics, engineering, and ...

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Bioinformatics Programmer Analyst information

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How much do bioinformatics programmer analyst jobs pay per hour?

As of Aug 19, 2026, the average hourly pay for bioinformatics programmer analyst in Watertown, MA is $50.55, according to ZipRecruiter salary data. Most workers in this role earn between $39.23 and $61.44 per hour, depending on experience, location, and employer.

What is a bioinformatics programmer analyst?

A Bioinformatics Programmer Analyst is a professional who combines knowledge of biology, computer science, and statistics to manage, analyze, and interpret complex biological data, often using programming and software development skills. They typically work with large datasets such as genomic sequences, gene expression profiles, or proteomics data to derive meaningful insights for research or clinical applications. Their role often involves developing software tools, writing scripts for data analysis, and collaborating with biologists and other scientists to solve research problems. Bioinformatics Programmer Analysts are essential in fields like genomics, pharmaceutical research, and personalized medicine.

What are the key skills and qualifications needed to thrive as a bioinformatics programmer analyst?

To thrive as a Bioinformatics Programmer Analyst, you need strong programming skills (such as Python, R, or Perl), a background in biology or bioinformatics, and typically a bachelor's or master's degree in a relevant field. Familiarity with bioinformatics tools, databases (like NCBI, Ensembl), and experience using Linux environments and version control systems (like Git) are essential. Analytical thinking, problem-solving abilities, and effective communication are crucial soft skills for interpreting data and collaborating with research teams. These competencies are vital for accurately analyzing biological data and delivering actionable insights in research or clinical settings.

What are some common challenges faced by bioinformatics programmer analysts when integrating new data types into existing pipelines?

Bioinformatics Programmer Analysts often encounter challenges such as data heterogeneity, inconsistent formats, and varying quality when integrating new data types into established analysis pipelines. Addressing these issues requires careful data preprocessing, validation, and sometimes developing custom scripts or modules to ensure compatibility. Collaboration with biologists and data scientists is essential to understand the context of the new data and to tailor solutions that maintain the reliability and reproducibility of results. Staying adaptable and up-to-date with evolving bioinformatics tools and standards also helps in overcoming these integration challenges.

What is the difference between Bioinformatics Programmer Analyst vs Bioinformatics Data Scientist?

AspectBioinformatics Programmer AnalystBioinformatics Data Scientist
Required CredentialsBachelor's in Bioinformatics, Computer Science, or related field; programming skillsBachelor's or Master's in Bioinformatics, Data Science, or related; strong statistical and programming skills
Work EnvironmentResearch labs, biotech companies, healthcare institutionsResearch institutions, biotech firms, healthcare analytics
Employer & Industry UsageUsed in biotech, pharma, healthcare for data analysis and software development

The Bioinformatics Programmer Analyst primarily focuses on developing software tools and analyzing biological data using programming skills. In contrast, the Bioinformatics Data Scientist emphasizes statistical analysis and data modeling to interpret complex biological datasets. Both roles require strong programming knowledge and are common in biotech and healthcare industries, but their core responsibilities differ in software development versus data analysis.

What are popular job titles related to Bioinformatics Programmer Analyst jobs in Watertown, MA?

For Bioinformatics Programmer Analyst jobs in Watertown, MA, the most frequently searched job titles are:

What job categories do people searching Bioinformatics Programmer Analyst jobs in Watertown, MA look for?

The top searched job categories for Bioinformatics Programmer Analyst jobs in Watertown, MA are:

What cities near Watertown, MA are hiring for Bioinformatics Programmer Analyst jobs?

Cities near Watertown, MA with the most Bioinformatics Programmer Analyst job openings:

Bioinformatics Programmer Analyst jobs near you
Infographic showing various Bioinformatics Programmer Analyst job openings in Watertown, MA as of August 2026, with employment types broken down into 83% Full Time, 12% Part Time, and 5% Contract. Highlights an 80% Physical, 9% Hybrid, and 11% Remote job distribution, with an average salary of $105,145 per year, or $50.6 per hour.

Senior Bioinformatics Research

Harvard University

Cambridge, MA • On-site

Full-time

Re-posted 8 days ago

Harvard University rating

8.5

Company rating: 8.5 out of 10

Based on 12 frontline employees who took The Breakroom Quiz

79th of 619 rated colleges and universities

Job description

Position
Details
Title
Senior Bioinformatics Research
School
Harvard Medical School
Department/Area
Perrimon Lab
Position Description
We are seeking a highly motivated post-doc trainee to join Dr. Norbert Perrimon's group in the Program of Genetics at Harvard Medical School. Perrimon lab is actively generating data sets of omics scale and this position will involve working with other post-doc trainees in the lab who are responsible of design and generating such datasets. In addition, this position involves working with DRSC/TRiP functional genomics core, a multi-disciplinary team of biologists, software engineers and bioinformaticians as we develop and leverage technological breakthroughs to explore the biology of complex systems. Principal Responsibilities include 1.) Design and implement reusable bioinformatics analysis pipelines for processing RNA-seq, single-cell RNA-seq, genomics and proteomics data. Develop novel algorithms and integrated data visualization applications when existing software packages are not available or are not adequate. 2.) Apply computational, statistical, and AI/ML approaches to uncover biological insights and support functional discovery by analyzing multi-omics datasets eg. genomics, transcriptomics, proteomics, metabolomics, and related datasets. 3.) Help develop custom databases, web portals and pipelines for managing raw and processed experimental data as well as reagent identification/designs. 4.) Collaborate closely with Investigator and lab members on research projects including defining the scope of the collaboration, researching the scientific topics and implementing the appropriate bioinformatics solutions that meet project timelines. Coordinate and collaborate with other bioinformaticians, biostatisticians, information technology professionals, and interdepartmental project teams. 5.) Properly document the procedures used in computational analysis, provide the summary reports of results, and contribute to grant and manuscript writing.
Salary and Benefits
This position is salaried and benefits eligible. Information regarding postdoctoral fellow salary, which is determined by the number of years post PhD, and benefits can be found at https://postdoc.hms.harvard.edu/guidelines.
With this appointment, you are represented by the Harvard Academic Workers (HAW) - UAW for purposes of collective bargaining and matters affecting your compensation and working conditions.
Basic Qualifications
Doctoral degree in Bioinformatics or in biology with extensive experience analyzing omics data. Strong background in programming, algorithms and statistics. Familiarity with programming techniques for analyzing data sets and experience working with BIG DATA (eg. NGS data in multi-TB scale). Experience using genome alignment software (bowtie2, bwa, tophat, etc.) is desired. Fluent in one programming language (Python, C, C++ or Java) and familiarity with scripting languages (bash, Perl). Knowledge of Unix operating system, terminal and bash is a plus. Experience using a compute cluster. Excellent information management skills.
Additional Qualifications
Experience using relational databases, SQL and / or structured data formats. Web programming experience (PHP, Django, JavaScript, JQuery, JSON, REST API) is a plus. Excellent oral and written communication skills as well as the ability to collaborate effectively with a diverse team.
Special Instructions
Contact Information
Claire Yanhui Hu
Contact Email
claire_hu@genetics.med.harvard.edu
Salary Range
Information regarding postdoctoral fellow salary, which is determined by the number of years post PhD, can be found at https://postdoc.hms.harvard.edu/guidelines.
Minimum Number of References Required
3
Maximum Number of References Allowed
3
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