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Bioinformatics Programmer Analyst Jobs in New York

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Bioinformatics Programmer Analyst information

What is a bioinformatics programmer analyst?

A Bioinformatics Programmer Analyst is a professional who combines knowledge of biology, computer science, and statistics to manage, analyze, and interpret complex biological data, often using programming and software development skills. They typically work with large datasets such as genomic sequences, gene expression profiles, or proteomics data to derive meaningful insights for research or clinical applications. Their role often involves developing software tools, writing scripts for data analysis, and collaborating with biologists and other scientists to solve research problems. Bioinformatics Programmer Analysts are essential in fields like genomics, pharmaceutical research, and personalized medicine.

What are the key skills and qualifications needed to thrive as a bioinformatics programmer analyst?

To thrive as a Bioinformatics Programmer Analyst, you need strong programming skills (such as Python, R, or Perl), a background in biology or bioinformatics, and typically a bachelor's or master's degree in a relevant field. Familiarity with bioinformatics tools, databases (like NCBI, Ensembl), and experience using Linux environments and version control systems (like Git) are essential. Analytical thinking, problem-solving abilities, and effective communication are crucial soft skills for interpreting data and collaborating with research teams. These competencies are vital for accurately analyzing biological data and delivering actionable insights in research or clinical settings.

What are some common challenges faced by bioinformatics programmer analysts when integrating new data types into existing pipelines?

Bioinformatics Programmer Analysts often encounter challenges such as data heterogeneity, inconsistent formats, and varying quality when integrating new data types into established analysis pipelines. Addressing these issues requires careful data preprocessing, validation, and sometimes developing custom scripts or modules to ensure compatibility. Collaboration with biologists and data scientists is essential to understand the context of the new data and to tailor solutions that maintain the reliability and reproducibility of results. Staying adaptable and up-to-date with evolving bioinformatics tools and standards also helps in overcoming these integration challenges.

What is the difference between Bioinformatics Programmer Analyst vs Bioinformatics Data Scientist?

AspectBioinformatics Programmer AnalystBioinformatics Data Scientist
Required CredentialsBachelor's in Bioinformatics, Computer Science, or related field; programming skillsBachelor's or Master's in Bioinformatics, Data Science, or related; strong statistical and programming skills
Work EnvironmentResearch labs, biotech companies, healthcare institutionsResearch institutions, biotech firms, healthcare analytics
Employer & Industry UsageUsed in biotech, pharma, healthcare for data analysis and software development

The Bioinformatics Programmer Analyst primarily focuses on developing software tools and analyzing biological data using programming skills. In contrast, the Bioinformatics Data Scientist emphasizes statistical analysis and data modeling to interpret complex biological datasets. Both roles require strong programming knowledge and are common in biotech and healthcare industries, but their core responsibilities differ in software development versus data analysis.

What are popular job titles related to Bioinformatics Programmer Analyst jobs in New York?

For Bioinformatics Programmer Analyst jobs in New York, the most frequently searched job titles are:

What job categories do people searching Bioinformatics Programmer Analyst jobs in New York look for?

The top searched job categories for Bioinformatics Programmer Analyst jobs in New York are:

What cities in New York are hiring for Bioinformatics Programmer Analyst jobs?

Cities in New York with the most Bioinformatics Programmer Analyst job openings:

Infographic showing various Bioinformatics Programmer Analyst job openings in New York as of August 2026, with employment types broken down into 1% Internship, 82% Full Time, 10% Part Time, 1% Temporary, and 6% Contract. Highlights an 81% Physical, 9% Hybrid, and 10% Remote job distribution.

Bioinformatician II - Allergy & Asthma Research - Genetics/Genomic Sciences

Mount Sinai Hospital

Manhattan, NY • On-site

Full-time

Re-posted 26 days ago


Mount Sinai rating

7.8

Company rating: 7.8 out of 10

Based on 295 frontline employees who took The Breakroom Quiz

127th of 889 rated healthcare providers


Job description


The Bunyavanich Lab is seeking talented individuals who can fulfill the responsibilities and requirements below to apply for a bioinformatician position in our NIH-funded lab at the Icahn School of Medicine at Mount Sinai, New York, NY. The successful applicant will be part of an interdisciplinary team that applies multi-omics and systems biology to interpret multi-scale data generated from subjects with asthma and allergic diseases. Our researchers receive generous packages, including robust salaries and a wealth of opportunities to participate in academic activities on campus and more broadly at regional, national, and international meetings. We are located in the heart of Manhattan, and Mount Sinai is one of the oldest and largest teaching hospitals in the US.
The Bioinformatician II partners with researchers/biologists from the Mount Sinai Department of Genetics and Genomic Sciences on innovative genomic analyses of structural variation, epigenetics, and gene expression in an integrated environment combining experimental and bioinformatic approaches to human disease. S/he leads a variety of projects and gains exposure to many productive areas of research, and develops/supports multiple research projects by delivering bioinformatics services for bio-medical data from cutting-edge genomic technologies.
Responsibilities
  • Analyze high-throughput sequence data.
  • Develop and implement methods to analyze these data.
  • Maintain large datasets linked to clinical data.
  • Communicate progress with PI regularly and contribute to the success of the research team.
  • Develop and maintain productive collaborations within Mount Sinai and with outside researchers in academia and industry.
  • Publish and present novel research findings in academic journals and conferences
  • Some supervision of trainees and technical staff may also be required.

Qualifications
  • M.S. in Bioinformatics, Biomedical Informatics, Computational Biology, or Genomics. Alternately, M.S. in a discipline requiring strong computational and analytical skills supplemented with some biology exposure. Ph.D in a related field preferred. Those with a Bachelors degree and additional post-graduate experience are considered.
  • 2+ years post-graduate experience in a research environment, including the manipulation of large biological datasets.
  • Advanced knowledge of genetics and/or statistical analysis software and online resources. Experience in programming environments such as R, Python and Unix Shell Scripting.

Preferred:
  • Ph.D. in bioinformatics, computer science, computational biology, genomics or a related field.
  • Excellent track record of analyzing sequence data. Experience with clinical cohorts and microbiome analysis a plus.
  • Demonstrated knowledge of statistics and statistical genetics. Familiarity with genomic data tools, repositories, and databases.
  • Strong attention to detail and solid analytical skills.
  • Ability to work hard and independently while contributing to the team effort and adhering to deadlines.
  • Excellent oral and written communication skills with track record of productive collaborations.
  • Demonstrated ability to work concurrently on several projects, and good understanding of analytic complexities to do independent research as well as assist other researchers.

About Us
Strength through Unity and Inclusion
The Mount Sinai Health System is committed to fostering an environment where everyone can contribute to excellence. We share a common dedication to delivering outstanding patient care. When you join us, you become part of Mount Sinai's unparalleled legacy of achievement, education, and innovation as we work together to transform healthcare. We encourage all team members to actively participate in creating a culture that ensures fair access to opportunities, promotes inclusive practices, and supports the success of every individual.
At Mount Sinai, our leaders are committed to fostering a workplace where all employees feel valued, respected, and empowered to grow. We strive to create an environment where collaboration, fairness, and continuous learning drive positive change, improving the well-being of our staff, patients, and organization. Our leaders are expected to challenge outdated practices, promote a culture of respect, and work toward meaningful improvements that enhance patient care and workplace experiences. We are dedicated to building a supportive and welcoming environment where everyone has the opportunity to thrive and advance professionally. Explore this opportunity and be part of the next chapter in our history.
About the Mount Sinai Health System:
Mount Sinai Health System is one of the largest academic medical systems in the New York metro area, with more than 48,000 employees working across eight hospitals, more than 400 outpatient practices, more than 300 labs, a school of nursing, and a leading school of medicine and graduate education. Mount Sinai advances health for all people, everywhere, by taking on the most complex health care challenges of our time - discovering and applying new scientific learning and knowledge; developing safer, more effective treatments; educating the next generation of medical leaders and innovators; and supporting local communities by delivering high-quality care to all who need it. Through the integration of its hospitals, labs, and schools, Mount Sinai offers comprehensive health care solutions from birth through geriatrics, leveraging innovative approaches such as artificial intelligence and informatics while keeping patients' medical and emotional needs at the center of all treatment. The Health System includes more than 9,000 primary and specialty care physicians; 13 joint-venture outpatient surgery centers throughout the five boroughs of New York City, Westchester, Long Island, and Florida; and more than 30 affiliated community health centers. We are consistently ranked by U.S. News & World Report's Best Hospitals, receiving high "Honor Roll" status, and are highly ranked: No. 1 in Geriatrics, top 5 in Cardiology/Heart Surgery, and top 20 in Diabetes/Endocrinology, Gastroenterology/GI Surgery, Neurology/Neurosurgery, Orthopedics, Pulmonology/Lung Surgery, Rehabilitation, and Urology. New York Eye and Ear Infirmary of Mount Sinai is ranked No. 12 in Ophthalmology. U.S. News & World Report's "Best Children's Hospitals" ranks Mount Sinai Kravis Children's Hospital among the country's best in several pediatric specialties. The Icahn School of Medicine at Mount Sinai is ranked No. 11 nationwide in National Institutes of Health funding and in the 99th percentile in research dollars per investigator according to the Association of American Medical Colleges. Newsweek's "The World's Best Smart Hospitals" ranks The Mount Sinai Hospital as No. 1 in New York and in the top five globally, and Mount Sinai Morningside in the top 20 globally.
Equal Opportunity Employer
The Mount Sinai Health System is an equal opportunity employer, complying with all applicable federal civil rights laws. We do not discriminate, exclude, or treat individuals differently based on race, color, national origin, age, religion, disability, sex, sexual orientation, gender, veteran status, or any other characteristic protected by law. We are deeply committed to fostering an environment where all faculty, staff, students, trainees, patients, visitors, and the communities we serve feel respected and supported. Our goal is to create a healthcare and learning institution that actively works to remove barriers, address challenges, and promote fairness in all aspects of our organization.

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