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Bioinformatics Machine Learning Internship Jobs in California

Apple

Machine Learning Engineer - Health AIML

Cupertino, CA · On-site

$212K - $318K/yr

D. in Computer Science, Machine Learning, Bioinformatics, or a related field. Strong background in generative models, natural language processing (NLP), and large language models (LLMs). 5+ years of ...

LLNL

Bioinformatics Scientist

Livermore, CA

We have an opening for a Bioinformatics Scientist to conduct research, training, and evaluating ... PhD in Computational Biology, Biophysics, Computational Bioengineering, Machine Learning ...

LLNL

Bioinformatics Scientist

Livermore, CA · On-site

We have an opening for a Bioinformatics Scientist to conduct research, training, and evaluating ... PhD in Computational Biology, Biophysics, Computational Bioengineering, Machine Learning ...

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Bioinformatics Machine Learning Internship information

What is a Bioinformatics Machine Learning Internship?

A Bioinformatics Machine Learning Internship is a temporary position, usually for students or recent graduates, where interns gain hands-on experience applying machine learning techniques to biological data. Interns may work on projects like analyzing genomic sequences, predicting protein structure, or developing algorithms for biomedical research. The role involves coding, data analysis, and collaborating with scientists to solve real-world biological problems. It offers exposure to both computational methods and biological sciences, preparing interns for careers in bioinformatics, data science, or research.

What are the key skills and qualifications needed to thrive as a Bioinformatics Machine Learning Intern, and why are they important?

To thrive as a Bioinformatics Machine Learning Intern, you need a solid background in biology, statistics, and computer science, typically supported by relevant coursework or a degree in bioinformatics, computational biology, or a related field. Familiarity with programming languages like Python or R, experience using bioinformatics tools (e.g., BLAST, Bioconductor), and knowledge of machine learning frameworks such as TensorFlow or scikit-learn are highly valued. Attention to detail, problem-solving skills, and effective communication help interns collaborate on interdisciplinary teams and interpret complex datasets. These skills ensure interns can contribute meaningfully to research projects, derive insights from biological data, and communicate findings clearly.

What are some typical projects or tasks a Bioinformatics Machine Learning Intern might work on during their internship?

As a Bioinformatics Machine Learning Intern, you'll often contribute to projects that involve developing and testing algorithms for analyzing biological data, such as genomic sequences or protein structures. Typical tasks may include preprocessing large datasets, implementing machine learning models to identify patterns or make predictions, and visualizing results for team discussions. Interns frequently collaborate with both computational scientists and experimental biologists, gaining exposure to interdisciplinary teamwork and real-world applications. This hands-on experience helps interns build both technical and domain-specific skills, preparing them for advanced roles in bioinformatics or data science.

What is the difference between Bioinformatics Machine Learning Internship vs Bioinformatics Data Analyst Internship?

AspectBioinformatics Machine Learning InternshipBioinformatics Data Analyst Internship
Required SkillsProgramming, machine learning, bioinformatics toolsData analysis, statistical skills, bioinformatics tools
Work EnvironmentResearch labs, biotech companies, academic institutionsResearch labs, healthcare, biotech firms
Industry UsageDeveloping algorithms, predictive models in bioinformaticsAnalyzing biological data, generating reports

While both internships involve bioinformatics, the Bioinformatics Machine Learning Internship focuses on developing machine learning models and algorithms, whereas the Bioinformatics Data Analyst Internship emphasizes analyzing biological data and generating insights. Both roles require programming and bioinformatics skills but differ in their core focus and application.

What are the most commonly searched types of Bioinformatics Machine Learning jobs in California? The most popular types of Bioinformatics Machine Learning jobs in California are:
What are popular job titles related to Bioinformatics Machine Learning Internship jobs in California? For Bioinformatics Machine Learning Internship jobs in California, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Machine Learning Internship jobs in California look for? The top searched job categories for Bioinformatics Machine Learning Internship jobs in California are:
What cities in California are hiring for Bioinformatics Machine Learning Internship jobs? Cities in California with the most Bioinformatics Machine Learning Internship job openings:
Bioinformatics Machine Learning Internship jobs near you
Infographic showing various Bioinformatics Machine Learning Internship job openings in California as of June 2026, with employment types broken down into 100% Internship. Highlights an 100% In-person job distribution.
Staff Bioinformatics / Machine Learning Scientist

Staff Bioinformatics / Machine Learning Scientist

Exact Sciences

La Jolla, CA • On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 13 days ago

Exact Sciences rating

8.5

Company rating: 8.5 out of 10

Based on 54 frontline employees who took The Breakroom Quiz

19th of 103 rated laboratories

Job description

Help us change lives
At Exact Sciences, we're helping change how the world prevents, detects and guides treatment for cancer. We give patients and clinicians the clarity needed to make confident decisions when they matter most. Join our team to find a purpose-driven career, an inclusive culture, and robust benefits to support your life while you're working to help others.
Position Overview
Staff Bioinformatics and Machine Learning Scientist will lead the development and application of machine learning, statistical modeling, and bioinformatics for next-generation sequencing-based products. This individual will serve as a senior technical leader within Research and Development, working cross-functionally with bioinformatics, assay development, data engineering, software development, quality and product development teams.
The ideal candidate has deep experience analyzing large and complex biological datasets in an industry setting and has demonstrated successful development, validation and deployment of algorithms, statistical and machine learning models using principled and reproducible methodology.
This is a senior individual contributor role requiring strong scientific and technical leadership, and the ability to translate complex genomic data into insights and products.
Essential Duties
Include, but are not limited to, the following:
  • Lead the development, evaluation and optimization of machine learning and statistical models for high-dimensional NGS and genomics datasets.
  • Design and implement bioinformatics algorithms to support NGS assay development, analytical performance evaluation, quality control, signal detection, classification, or interpretation.
  • Collaborate with wet-lab scientists to design experiments, interpret results, identify technical issues, and recommend next steps.
  • Apply rigorous statistical and computational methods to evaluate assay performance, reproducibility, robustness, sensitivity, specificity, and sources of technical or biological variation.
  • Develop reproducible analysis workflows using modern bioinformatics, data science, and software engineering practices.
  • Work within cloud computing environments to process, analyze, and manage large-scale sequencing datasets.
  • Present and summarize complex technical findings effectively to cross-functional audiences.
  • Serve as subject matter expert for NGS bioinformatics, machine learning and statistical analysis.
  • Identify opportunities and build out proof of concept implementations for new state-of-the-art methodology across machine learning, bioinformatics and software engineering
  • Provide guidance and mentorship to junior team members.
  • Support development activities within a quality-managed or regulated environment.
  • Uphold company mission and values through accountability, innovation, integrity, quality, and teamwork.
  • Support and comply with the company's Quality Management System policies and procedures.
  • Maintain regular and reliable attendance.
  • Ability to act with an inclusion mindset and model these behaviors for the organization.
  • Ability to work on a mobile device, tablet, or in front of a computer screen and/or perform typing for approximately 90% of a typical working day.
  • Ability to work on a computer and phone simultaneously.
  • Ability to travel 10% of working time away from work location, may include overnight/weekend travel.

Minimum Qualifications
  • Ph.D. in bioinformatics, computational biology, computer science, mathematics, or related field; or Master's degree in bioinformatics, computational biology, computer science, mathematics, or related field plus 4 years of experience in lieu of a Ph.D.; or Bachelor's degree in bioinformatics, computational biology, computer science, mathematics, or related field plus 6 years of experience in lieu of Ph.D.
  • 8+ years of industry or academia experience in bioinformatics.
  • 6+ years of experience in medical device/IVD, biotech, life science or pharmaceutical industry.
  • Demonstrated experience in developing statistical and quantitative methods.
  • Deep knowledge and thorough understanding of molecular biology and/or biochemistry and/or next-generation sequencing (NGS) and genomics.
  • Demonstrated expertise in product/assay research, design, or development.
  • Basic computer skills to include Internet navigation, Email usage, and word processing. Proficient in Microsoft Office to include Excel, Word, and PowerPoint.
  • Demonstrated ability to perform the Essential Duties of the position with or without accommodation.

Preferred Qualifications
  • 10+ years of experience in medical device/IVD, biotech, life science or pharmaceutical industry.
  • Deep expertise in NGS bioinformatics and genomic data analysis.
  • Practical experience effectively leveraging AI in regulated environments
  • Experience with modern cloud-based MLOps systems
  • Experience developing and applying advanced linear and non-linear statistical learning methods on complex datasets, including but not limited to supervised and unsupervised machine learning techniques.
  • Familiarity with applying deep learning to high dimensional data.
  • Previous experience as a project lead for a team of scientists.
  • 2+ years of direct people leadership and management experience.
  • Experience in a pharmaceutical or biotech manufacturing environment, preferably in a GMP and/or ISO environment.
  • Previous industry experience in product development or technical support.
  • Previous experience working in molecular diagnostics.

#LI-CB1
Salary Range:
California Ranges: $154,400.00 - $231,600.00
The annual base salary shown is for this position located in US - CA - La Jolla on a full-time basis. In addition, this position is bonus eligible.
Exact Sciences is proud to offer an employee experience that includes paid time off (including days for vacation, holidays, volunteering, and personal time), paid leave for parents and caregivers, a retirement savings plan, wellness support, and health benefits including medical, prescription drug, dental, and vision coverage. Learn more about our benefits.
Our success relies on the experiences and perspectives of a diverse team, and Exact Sciences fosters a culture where all employees can develop personally and professionally with a sense of respect and belonging. If you require an accommodation, please contact us here.
Not ready to apply? Join our Talent Community to stay updated on the latest news and opportunities at Exact Sciences.
We are an equal employment opportunity employer. All qualified applicants will receive consideration for employment without regard to disability, protected veteran status, and any other status protected by applicable local, state, or federal law.
To view the Right to Work, E-Verify Employer, and Pay Transparency notices and Federal, Federal Contractor, and State employment law posters, visit our compliance hub. The documents summarize important details of the law and provide key points that you have a right to know.

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