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Bioinformatics Engineer Jobs in Austin, TX (NOW HIRING)

Apple

UEFI BIOS Engineer - Data Center HWE

Austin, TX

$150K - $277K/yr

We are seeking a curious and self-motivated UEFI BIOS Engineer to join our team and contribute to the development of next-generation industry-standard server platforms. Our work focuses on enhancing ...

Apple

UEFI BIOS Engineer - Data Center HWE

Austin, TX · On-site

We are seeking a curious and self-motivated UEFI BIOS Engineer to join our team and contribute to the development of next-generation industry-standard server platforms. Our work focuses on enhancing ...

Apple

UEFI BIOS Engineer - Data Center HWE

Austin, TX

$150K - $277K/yr

We are seeking a curious and self-motivated UEFI BIOS Engineer to join our team and contribute to the development of next-generation industry-standard server platforms. Our work focuses on enhancing ...

Natera

Quality Engineer

Austin, TX · Hybrid

$71K - $92K/yr

Quality Engineer supports the quality system processes of the Natera CLIA laboratories and ... Sequencing, Bioinformatics etc. * Demonstrated good judgment, excellent attention to detail ...

Natera

Quality Engineer

Austin, TX · On-site

$94K - $117K/yr

... Sequencing, Bioinformatics etc. * Demonstrated good judgment, excellent attention to detail ... engineers and many other professionals from world-class institutions, who care deeply for our work ...

Aledade

Clinical Informaticist

Austin, TX · Remote

Working at the intersection of clinical knowledge and data engineering, you will collaborate with ... Bachelor's or Master's degree in Nursing, Medical/Health Informatics, Bioinformatics, or a related ...

Aledade

Clinical Informaticist

Austin, TX

Working at the intersection of clinical knowledge and data engineering, you will collaborate with ... Bachelor's or Master's degree in Nursing, Medical/Health Informatics, Bioinformatics, or a related ...

Aledade

Clinical Informaticist

Austin, TX · On-site +1

Working at the intersection of clinical knowledge and data engineering, you will collaborate with ... Bachelor's or Master's degree in Nursing, Medical/Health Informatics, Bioinformatics, or a related ...

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All JobsBioinformatics Engineer JobsBioinformatics Engineer Jobs in Austin, TX

Bioinformatics Engineer information

See Austin, TX salary details

$42.6K

$129.9K

$236.4K

How much do bioinformatics engineer jobs pay per year?

As of Jul 27, 2026, the average yearly pay for bioinformatics engineer in Austin, TX is $129,901.00, according to ZipRecruiter salary data. Most workers in this role earn between $95,200.00 and $155,600.00 per year, depending on experience, location, and employer.

What is a Bioinformatics Engineer?

A Bioinformatics Engineer is a professional who combines expertise in computer science, statistics, and biology to develop software tools and algorithms for analyzing biological data. They often work with large datasets such as genomic sequences, protein structures, and clinical information to help scientists make sense of complex biological systems. Their work is essential in fields like genomics, personalized medicine, and drug discovery, where managing and interpreting vast amounts of data is crucial. Bioinformatics Engineers may also collaborate with researchers to design experiments and interpret results, bridging the gap between biology and technology.

What are the key skills and qualifications needed to thrive as a Bioinformatics Engineer, and why are they important?

To thrive as a Bioinformatics Engineer, you need a strong background in biology, computer science, and statistics, often supported by a degree in bioinformatics or a related field. Experience with programming languages such as Python or R, familiarity with databases, and knowledge of tools like BLAST, Bioconductor, or next-generation sequencing (NGS) analysis platforms are typically required. Strong problem-solving, analytical thinking, and effective communication skills help you collaborate with interdisciplinary teams and convey complex findings. These skills and qualifications are essential for efficiently analyzing biological data, developing robust computational tools, and advancing research in genomics and life sciences.

What Is Bioinformatics Engineering?

A bioinformatics engineer uses various methods for the analysis of complex biological data such as gene sequence and protein absorption. In this career, your job duties include performing detailed data analysis, developing data queries, and presenting your results back to the research team. The qualifications needed for a career as a bioinformatics engineer include a bachelor’s degree in engineering, statistics, computer science, or mathematics. Some employers prefer a master’s degree as well. You also need strong analytical skills and a good understanding of the biosciences.

What are some common challenges faced by Bioinformatics Engineers when integrating new data sources into existing pipelines?

Bioinformatics Engineers often encounter challenges such as data format inconsistencies, varying quality of datasets, and the need to ensure compatibility with existing analysis pipelines. Integrating new data sources may require custom scripts or tools for parsing and preprocessing, as well as thorough validation to maintain reproducibility and reliability of results. Collaboration with wet-lab scientists and software engineers is essential to clarify data requirements and streamline the integration process.

What is the difference between Bioinformatics Engineer vs Bioinformatics Analyst?

AspectBioinformatics EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentResearch labs, biotech companies, pharmaceutical firmsResearch institutions, healthcare organizations, biotech companies
Employer & Industry UsageDevelops tools, pipelines, and software for biological data analysisInterprets data, performs statistical analysis, and reports findings

While both roles require a background in bioinformatics and involve working with biological data, Bioinformatics Engineers focus on developing software and tools, whereas Bioinformatics Analysts primarily analyze and interpret data to support research and decision-making.

More about Bioinformatics Engineer jobs
What are the most commonly searched types of Bioinformatics Engineer jobs in Austin, TX? The most popular types of Bioinformatics Engineer jobs in Austin, TX are:
What are popular job titles related to Bioinformatics Engineer jobs in Austin, TX? For Bioinformatics Engineer jobs in Austin, TX, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Engineer jobs in Austin, TX look for? The top searched job categories for Bioinformatics Engineer jobs in Austin, TX are:
What cities near Austin, TX are hiring for Bioinformatics Engineer jobs? Cities near Austin, TX with the most Bioinformatics Engineer job openings:
Bioinformatics Engineer jobs near you
Infographic showing various Bioinformatics Engineer job openings in Austin, TX as of July 2026, with employment types broken down into 80% Full Time, and 20% Part Time. Highlights an 90% In-person, and 10% Remote job distribution, with an average salary of $129,901 per year, or $62.5 per hour.
Scientist III, Bioinformatics

Scientist III, Bioinformatics

Thermo Fisher Scientific

Austin, TX

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 25 days ago

Thermo Fisher Scientific rating

7.7

Company rating: 7.7 out of 10

Based on 419 frontline employees who took The Breakroom Quiz

199th of 535 rated manufacturers

Job description

Work Schedule

Standard (Mon-Fri)

Environmental Conditions

Office

Job Description

At Thermo Fisher Scientific, our mission is to enable our customers to make the world healthier, cleaner, and safer. Within the Clinical Sequencing Division, bioinformatics plays an important role in enabling precision oncology diagnostics and advancing genomic medicine.

Location/Division-Specific Information:

Carlsbad, CA, or Austin, TX. Relocation assistance is NOT provided. 

*Must be legally authorized to work in the United States without sponsorship.

*Must be able to pass a comprehensive background check, which includes a drug screen.

Discover Impactful Work:

As a Scientist III, Bioinformatics, you will contribute to the development and maintenance of bioinformatics applications, data systems, and computational workflows that support next-generation sequencing (NGS) companion diagnostic (CDx) assay development.

In this role, you will collaborate with scientists, engineers, and cross-functional partners to develop tools and workflows that support genomic data analysis, assay development, and regulated diagnostic programs. Your work will help ensure that bioinformatics systems supporting diagnostic development are reliable, reproducible, and well-documented.

You will also contribute to emerging initiatives that explore the use of AI-enabled tools to enhance bioinformatics workflows, data analysis, and internal scientific applications.

This position combines bioinformatics expertise with scientific software development to support scalable genomic analysis and integration with laboratory and data management systems.

A Day in the Life:

Bioinformatics Application Development

Develop and maintain internal bioinformatics applications and computational tools to support genomic data analysis and the development of companion diagnostic assays.

Workflow and Pipeline Development

Implement and improve automated workflows for next-generation sequencing (NGS) data processing and analysis using scripting languages and workflow frameworks.

Data Systems and Integration

Support development and integration of bioinformatics workflows with data systems, databases, and laboratory information management systems (LIMS).

AI-Enabled Workflow Support

Contribute to the evaluation and integration of AI-enabled tools that enhance bioinformatics workflows, scientific data analysis, and internal research applications.

Cross-Functional Collaboration and Documentation

Work with scientists, engineers, and program teams to develop computational solutions supporting diagnostic development and document workflows to ensure reproducibility and maintainability within regulated environments.

Keys to Success

Education

Bachelor’s in Bioinformatics, Computational Biology, Computer Science, Molecular Biology, or a related field required.

Experience

  • 5 years of experience in bioinformatics and NGS data analysis (Advanced degree plus 3 years of experience).
  • Experience programming in Python or a similar language.
  • Experience working in Linux or Unix environments.
  • Experience developing or supporting bioinformatics pipelines or analysis tools.
  • Familiarity with next-generation sequencing (NGS) data analysis.
  • Experience using version control systems such as Git.
  • Experience collaborating with cross-functional scientific teams.

Knowledge, Skills, and Abilities

Programming and Scientific Computing

  • Proficiency in Python or similar programming languages.
  • Experience developing scripts, tools, or applications for scientific data analysis.
  • Familiarity with software development practices such as version control and documentation.

Bioinformatics and Genomics

  • Understanding of common bioinformatics workflows and sequencing data formats.
  • Experience working with genomic datasets.

Data Systems

  • Familiarity with databases or structured data systems (e.g., SQL).
  • Experience working with large or complex scientific datasets.

Workflow and Infrastructure

  • Familiarity with workflow frameworks such as Nextflow, Snakemake, or similar tools.
  • Experience with container technologies such as Docker is helpful.
  • Exposure to cloud computing platforms such as AWS or GCP is beneficial.

AI and Emerging Technologies

  • Exposure to AI or machine learning tools used in scientific computing or data analysis is a plus.
  • Interest in applying AI-enabled tools to improve scientific workflows.

Collaboration and Communication

  • Ability to communicate technical information clearly.
  • Ability to work effectively in collaborative, multidisciplinary teams.
  • Strong problem-solving and analytical skills.

Benefits:

We offer competitive remuneration, annual incentive plan bonus, healthcare, and a range of employee benefits. Thermo Fisher Scientific offers employment with an innovative, forward-thinking organization, and outstanding career and development prospects. We offer an exciting company culture that stands for integrity, intensity, involvement, and innovation!

Compensation and Benefits

The salary range estimated for this position based in California is $95,900.00–$120,000.00.

This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:

  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs

  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement

  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy

  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan

  • Employees’ Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards

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