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Bioinformatics Data Engineer Jobs in Washington (NOW HIRING)

Axle

Bioinformatics Engineer

Rockville, MD

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ... Optimize data input/output operations across pipeline modules to minimize bottlenecks and reduce ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ... Optimize data input/output operations across pipeline modules to minimize bottlenecks and reduce ...

Axle

Bioinformatics Engineer

Rockville, MD

Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of ... Optimize data input/output operations across pipeline modules to minimize bottlenecks and reduce ...

Axle

Data Engineer

Rockville, MD · On-site

$116K - $140K/yr

Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics, Information Systems, Engineering, or a related field, or equivalent practical experience. Proven ...

Axle

Data Engineer

Rockville, MD

$116K - $140K/yr

Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics, Information Systems, Engineering, or a related field, or equivalent practical experience. Proven ...

Axle

Data Engineer

Rockville, MD

$116K - $140K/yr

Bachelor's degree in Computer Science, Data Science, Bioinformatics, Biomedical Informatics, Information Systems, Engineering, or a related field, or equivalent practical experience. Proven ...

Axle

Bioinformatics Engineer

Rockville, MD · On-site

... and data science applications. They are seeking a Bioinformatics Engineer to join their team ... supporting major pharmaceutical clients, focusing on optimizing and integrating bioinformatics ...

Axle

Bioinformatics Scientist

Bethesda, MD · On-site

Address bioinformatics, scientific computing, and data analysis needs of users within the Division ... above data modalities. * Provide programming and troubleshooting support to the Research ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD · On-site

$65K - $108K/yr

... and data analysis. * Initiate interdisciplinary collaborations with scientists from other ... Provide programming and troubleshooting support to the Federal Government in the dissemination of ...

Axle

Bioinformatics Scientist

Bethesda, MD

Address bioinformatics, scientific computing, and data analysis needs of users within the Division ... above data modalities. * Provide programming and troubleshooting support to the Research ...

Axle

Bioinformatics Scientist

Bethesda, MD

Address bioinformatics, scientific computing, and data analysis needs of users within the Division ... above data modalities. * Provide programming and troubleshooting support to the Research ...

Guidehouse

Bioinformatics Scientist

Bethesda, MD

$65K - $108K/yr

... and data analysis. * Initiate interdisciplinary collaborations with scientists from other ... Provide programming and troubleshooting support to the Federal Government in the dissemination of ...

Kelly Services

Bioinformatics Scientist

Bethesda, MD · On-site +1

Performs computations on research data analysis. * Collaborate with scientists from other ... engineering, technology, professional, and administrative support roles. Our experts will connect ...

Kelly Services

Bioinformatics Scientist

Bethesda, MD · On-site

... ring, scientific, and healthcare professionals the opportunity to work with one of the most ... Transcriptomic data analyses including alignment, abundance estimation, differential gene ...

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All JobsBioinformatics Data Engineer JobsBioinformatics Data Engineer Jobs in Washington

Bioinformatics Data Engineer information

How do Bioinformatics Data Engineers typically collaborate with researchers and other teams in a biomedical organization?

Bioinformatics Data Engineers often work closely with biologists, data scientists, and software engineers to ensure the effective collection, processing, and analysis of complex biological data. They regularly participate in cross-functional meetings to understand research goals, develop data pipelines, and troubleshoot data-related issues. Collaboration is essential, as engineers must translate scientific requirements into technical solutions, provide data access and visualization tools, and support researchers in extracting meaningful insights from large datasets. This teamwork fosters a dynamic environment where communication and adaptability are key.

What is the difference between Bioinformatics Data Engineer vs Bioinformatics Analyst?

AspectBioinformatics Data EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills
Work EnvironmentData pipelines, database management, software developmentData interpretation, report generation, biological data analysis
Employer & Industry UsageBiotech companies, research labs, pharmaResearch institutions, healthcare, biotech
Common Search & ComparisonFocuses on data infrastructure and pipelinesFocuses on biological data interpretation

The main difference between a Bioinformatics Data Engineer and a Bioinformatics Analyst lies in their focus areas. Data Engineers build and maintain data pipelines and infrastructure, while Analysts interpret biological data to generate insights. Both roles require strong bioinformatics knowledge, but Data Engineers emphasize programming and data management, whereas Analysts focus on biological interpretation and reporting.

What is a Bioinformatics Data Engineer?

A Bioinformatics Data Engineer is a professional who designs, develops, and maintains data infrastructure for managing and analyzing large-scale biological data, such as genomics or proteomics datasets. They build pipelines and tools to process, store, and retrieve complex biological information efficiently. Their work enables researchers and scientists to access and interpret data for discoveries in fields like medicine, genetics, and biotechnology. Often, they collaborate closely with bioinformaticians, data scientists, and software engineers to support research initiatives.

What are the key skills and qualifications needed to thrive as a Bioinformatics Data Engineer, and why are they important?

To thrive as a Bioinformatics Data Engineer, you need a strong background in computer science, biology, and statistics, often supported by a relevant degree and experience in data engineering. Proficiency with programming languages (such as Python, R, or SQL), bioinformatics tools, cloud platforms, and big data frameworks (like Hadoop or Spark) is typically required. Strong problem-solving, collaboration, and communication skills help you work effectively across interdisciplinary teams and convey complex findings. These skills ensure accurate analysis, efficient data pipeline development, and meaningful insights that advance biological research and healthcare solutions.
What are popular job titles related to Bioinformatics Data Engineer jobs in Washington? For Bioinformatics Data Engineer jobs in Washington, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Data Engineer jobs in Washington look for? The top searched job categories for Bioinformatics Data Engineer jobs in Washington are:
What cities in Washington are hiring for Bioinformatics Data Engineer jobs? Cities in Washington with the most Bioinformatics Data Engineer job openings:
Bioinformatics Data Engineer jobs near you
Bioinformatics Engineer

Bioinformatics Engineer

Axle

Rockville, MD

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 27 days ago

Job description

(ID: 2026-2391)


Axle is a bioscience and information technology company that offers advancements in translational research, biomedical informatics, and data science applications to research centers and healthcare organizations nationally and abroad. With experts in biomedical science, software engineering, and program management, we focus on developing and applying research tools and techniques to empower decision-making and accelerate research discoveries. We work with some of the top research organizations and facilities in the country including multiple institutes at the National Institutes of Health (NIH).


Axle is seeking a Bioinformatics Engineer to join our vibrant team at the National Institutes of Health (NIH) supporting the Rockville, MD.


Benefits We Offer:

  • 100% Medical, Dental & Vision Coverage for Employees
  • Paid Time Off and Paid Holidays
  • 401K match up to 5%
  • Educational Benefits for Career Growth
  • Employee Referral Bonus
  • Flexible Spending Accounts:
    • Healthcare (FSA)
    • Parking Reimbursement Account (PRK)
    • Dependent Care Assistant Program (DCAP)
    • Transportation Reimbursement Account (TRN)

Axle is seeking a skilled Bioinformatics Engineer to join our team supporting major pharmaceutical clients. In this role, you will review, assess, optimize, integrate, and extend production-grade bioinformatics workflows for high-throughput sequencing analysis. The ideal candidate combines deep expertise in genomics analysis methods with strong software engineering practices and cloud computing experience.

Key Responsibilities

  • Evaluate existing bioinformatics pipelines for performance, accuracy, and maintainability, identifying opportunities for optimization and enhancement

  • Develop, extend, and maintain Nextflow workflows for bulk RNA-seq, single-cell RNA-seq, DNA variant calling, methylation analysis, and emerging assay types

  • Architect scalable solutions capable of processing thousands of samples efficiently on Google Cloud Platform

  • Optimize data input/output operations across pipeline modules to minimize bottlenecks and reduce computational costs

  • Prepare and structure analysis outputs for visualization platforms and downstream statistical or machine learning applications

  • Implement best practices for workflow versioning, containerization, testing, and documentation

  • Collaborate with computational biologists, data scientists, and software engineers to integrate pipelines into broader analytical ecosystems

  • Stay current with advances in sequencing technologies and analytical methods, evaluating and incorporating new tools as appropriate

Required Qualifications

  • Master's degree in bioinformatics, computational biology, computer science, or a related field (or equivalent experience)

  • 3+ years of hands-on experience developing and maintaining bioinformatics pipelines in a production environment

  • Proficiency with Nextflow (DSL2) and familiarity with workflow management concepts

  • Strong experience with RNA-seq analysis (both bulk and single-cell) and DNA sequencing workflows (variant calling, methylation)

  • Working knowledge of Google Cloud Platform services (Compute Engine, Cloud Storage, Batch, Life Sciences API, or similar)

  • Proficiency in Python and/or R for scripting, data manipulation, and tool development

  • Experience with containerization technologies (Docker, Singularity)

  • Familiarity with version control systems (Git) and CI/CD practices

  • Strong understanding of genomic file formats (FASTQ, BAM, VCF, BED) and common bioinformatics tools (STAR, Salmon, BWA, GATK, Bismark, Cell Ranger, Seurat, Scanpy)

Preferred Qualifications

  • PhD in a relevant field

  • Experience with nf-core pipelines and community standards

  • Familiarity with workflow orchestration at scale (Cromwell, AWS Batch, or similar platforms)

  • Experience optimizing cloud costs and resource utilization for large-scale genomics workloads

  • Knowledge of data visualization tools and frameworks (e.g., R Shiny, Plotly, custom dashboards)

  • Experience in pharmaceutical, biotech, or regulated research environments

  • Familiarity with FAIR data principles and metadata standards

What We Offer

  • Opportunity to work on cutting-edge genomics projects with industry-leading pharmaceutical partners

  • Collaborative environment with experts in bioinformatics, data science, and software engineering

  • Professional development and growth opportunities

  • Competitive salary and benefits package


Disclaimer: The above description is meant to illustrate the general nature of work and level of effort being performed by individuals assigned to this position or job description. This is not restricted as a complete list of all skills, responsibilities, duties, and/or assignments required. Individuals may be required to perform duties outside of their position, job description or responsibilities as needed.


The diversity of Axle's employees is a tremendous asset. We are firmly committed to providing equal opportunity in all aspects of employment and will not tolerate any illegal discrimination or harassment based on age, race, gender, religion, national origin, disability, marital status, covered veteran status, sexual orientation, status with respect to public assistance, and other characteristics protected under state, federal, or local law and to deter those who aid, abet, or induce discrimination or coerce others to discriminate.


Accessibility: If you need an accommodation as part of the employment process please contact: careers@axleinfo.com


This role has a market-competitive salary with an anticipated base compensation range listed below. Actual salaries will vary depending on a candidate's experience, qualifications, skills, and location.

Salary Range
$125,000—$150,000 USD