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Bioinformatic Engineer Jobs in Massachusetts (NOW HIRING)

Harvard University

Bioinformatics Software Engineer

Boston, MA · On-site

$57/hr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

We are looking for a highly skilled Bioinformatics Software Engineer who specializes in designing, developing, deploying, and maintaining scalable bioinformatics pipelines on cloud-based ...

Watershed Informatics

Software Engineer

Boston, MA · On-site

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge ...

Watershed Informatics

Infrastructure Engineer

Cambridge, MA · On-site

$117K - $154K/yr

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge ...

Watershed Informatics

Infrastructure Engineer

Cambridge, MA

$117K - $154K/yr

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge ...

micro1 AI

Bioinformatics Software Engineer

Worcester, MA · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

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All JobsBioinformatic Engineer JobsBioinformatic Engineer Jobs in Massachusetts

Bioinformatic Engineer information

See Massachusetts salary details

$36K

$97.4K

$155.1K

How much do bioinformatic engineer jobs pay per year?

As of Aug 18, 2026, the average yearly pay for bioinformatic engineer in Massachusetts is $97,399.00, according to ZipRecruiter salary data. Most workers in this role earn between $72,600.00 and $119,000.00 per year, depending on experience, location, and employer.

What is a bioinformatic engineer?

Bioinformatic Engineers are professionals who develop and apply computational tools and techniques to analyze biological data, such as DNA sequences, protein structures, and genetic information. They combine expertise in computer science, biology, and mathematics to process large datasets generated by modern biological experiments. Their work supports research in areas like genomics, drug discovery, and personalized medicine by helping scientists make sense of complex biological data.

What skills and qualifications are needed to thrive as a bioinformatic engineer?

To thrive as a Bioinformatic Engineer, you need a strong background in computational biology, programming (such as Python or R), statistics, and a relevant degree in bioinformatics, computer science, or a related field. Familiarity with bioinformatics tools (like BLAST, GATK, or Bioconductor), data analysis platforms, and experience with databases such as SQL are typically required. Strong problem-solving abilities, attention to detail, and effective communication skills help you interpret complex data and collaborate with multidisciplinary teams. These skills are essential for accurately analyzing biological data, deriving meaningful insights, and facilitating research or clinical advancements.

What are common challenges faced by bioinformatic engineers when working with large-scale genomic data?

Bioinformatic Engineers often encounter challenges related to managing and processing vast amounts of genomic data, which can require significant computational resources and efficient data handling strategies. Ensuring data integrity, reproducibility of analyses, and effective collaboration with multidisciplinary teams of biologists, statisticians, and software developers are also key aspects of the role. Staying updated with the latest bioinformatics tools and pipelines is essential, as the field evolves rapidly. Overcoming these challenges requires strong problem-solving skills, attention to detail, and the ability to communicate complex findings to non-technical stakeholders.

What is the difference between Bioinformatic Engineer vs Bioinformatics Analyst?

AspectBioinformatic EngineerBioinformatics Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fieldsBachelor's or Master's in Bioinformatics, Biology, or related fields
Work EnvironmentResearch labs, biotech companies, healthcare institutionsResearch institutions, healthcare, pharmaceutical companies
Employer & Industry UsageDevelops tools, pipelines, and software for biological data analysisAnalyzes biological data, interprets results, and reports findings

While both roles involve biological data, Bioinformatic Engineers focus on developing computational tools and pipelines, whereas Bioinformatics Analysts primarily interpret data and generate insights. Both positions require similar educational backgrounds and are vital in research and healthcare settings, but their core responsibilities differ in development versus analysis.

What are popular job titles related to Bioinformatic Engineer jobs in Massachusetts?

For Bioinformatic Engineer jobs in Massachusetts, the most frequently searched job titles are:

What job categories do people searching Bioinformatic Engineer jobs in Massachusetts look for?

The top searched job categories for Bioinformatic Engineer jobs in Massachusetts are:

What cities in Massachusetts are hiring for Bioinformatic Engineer jobs?

Cities in Massachusetts with the most Bioinformatic Engineer job openings:

Bioinformatic Engineer jobs near you
Infographic showing various Bioinformatic Engineer job openings in Massachusetts as of August 2026, with employment types broken down into 92% Full Time, 3% Part Time, and 5% Contract. Highlights an 86% Physical, 5% Hybrid, and 9% Remote job distribution, with an average salary of $97,399 per year, or $46.8 per hour.

Customer Success Engineer, Bioinformatics

Watershed Informatics

Cambridge, MA

Full-time

Re-posted 3 days ago

Job description

About Watershed 

Our vision is to become the leading biocomputing platform. The future of biology is in big data analysis, and we are on a mission to accelerate digital drug discovery with the Watershed platform. Watershed enables scientists to conduct all essential analysis - from lab data to plot - with a single software platform. 

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge, Massachusetts, composed of people who have come together to enable outcomes while empowering the research of all those committed to changing lives - all while bringing transformational change to a $40 billion industry. 

About the Role 

Customer Success Engineers work at the intersection of software engineering, bioinformatics, and customer success to understand and fulfill customer support needs. 

Customers choose Watershed to analyze and share large biological data sources in flexible, powerful computing environments. Customers will engage you as a first escalation point - you will draw on a knowledge of Linux systems, software engineering, and bioinformatics to unpack and resolve requests.

You will track down support requests across the platform, partnering with our Product Manager and Head of Operations. Expect variety in the complexity and kinds of technology and bioinformatics challenges you face. As you troubleshoot recurring issues, you will document and elevate common requests and fixes to improve future support.

Responsibilities 

  • Develop an intimate understanding of how customers use the Watershed platform.
  • Analyze and share data on customer usage, activity, and trends. Suggest upsell opportunities and advise on account-specific insights.
  • Triage, manage, and resolve incoming customer support requests. Requests will vary in complexity from Level 1 support to interrelated Linux, software, and bioinformatics issues.
  • Establish and uphold company support standards. Create resolution metrics and expand support programs as needed. 
  • Create & manage a system for documenting solutions and workarounds for recurring requests so team members can resolve similar issues quickly.
  • Write platform guides and FAQs to support new feature rollouts. Develop case studies detailing tailored customer solutions.
  • Directly report to the Head of Operations & CEO. Escalate key support insights (i.e., 'buggy functions' or common user misunderstandings). 
  • Ensure an excellent user experience on the Watershed platform

Qualifications 

  • 1-3 years of professional experience supporting technical and non-technical customers as a bioinformatician. Experience working in a bioinformatics consultancy is strongly preferred
  • A working understanding of Linux commands, system troubleshooting, and Docker.
  • Proficiency with any one of Bash, Python, or R. Familiarity with all three is preferred.
  • Familiarity with bioinformatics, computational biology, or a Masters in Bioinformatics is preferred


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