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Automation Engineer Jobs in Franklin, WI (NOW HIRING)

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Automation Engineer information

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$34.3K

$99.4K

$151.3K

How much do automation engineer jobs pay per year?

As of Sep 4, 2026, the average yearly pay for automation engineer in Franklin, WI is $99,448.00, according to ZipRecruiter salary data. Most workers in this role earn between $80,300.00 and $114,600.00 per year, depending on experience, location, and employer.

What is an automation engineer?

Automation Engineers are professionals who design, develop, and implement automated systems and processes to improve efficiency, quality, and productivity in various industries. They work with technologies such as robotics, control systems, and software to automate repetitive or complex tasks. Their responsibilities often include programming, troubleshooting, and maintaining automation equipment, as well as collaborating with other engineers to optimize workflows. Automation Engineers are employed in sectors like manufacturing, IT, automotive, and pharmaceuticals.

What does an automation engineer do?

As an automation engineer, your job is to design and develop automated machines for your company. Your responsibilities may include determining the best way to implement automation, creating devices that meet the company's needs and specifications, testing robots to ensure they perform as designed, and monitoring existing automation to check if repair or replacement is needed. Many duties of this job vary by industry. For example, automation engineers work in areas like the automotive industry, food preparation and packaging, electronics production, and appliance production, and each of these fields has different materials and objectives. However, regardless of industry, most automation engineers work with both hardware and software.

What are some common challenges automation engineers face when integrating new systems into existing workflows?

Automation Engineers often encounter challenges when integrating new automation solutions with legacy systems, including compatibility issues and data migration complexities. Coordinating with cross-functional teams—such as IT, operations, and production—can require extensive communication to ensure seamless implementation. Additionally, balancing the need for system reliability with innovation and minimizing downtime during transitions are key concerns. Proactively addressing these challenges through thorough planning and testing helps ensure successful integration.

What are the key skills and qualifications needed to thrive as an automation engineer, and why are they important?

To thrive as an Automation Engineer, you need a strong grasp of control systems, programming (such as PLC, Python, or C++), and a relevant engineering degree. Familiarity with automation platforms like Rockwell, Siemens, or SCADA systems, as well as certifications like ISA or relevant vendor-specific credentials, is highly valued. Analytical thinking, problem-solving, and effective communication are essential soft skills for collaborating with diverse teams and troubleshooting complex issues. These skills and qualifications are critical for designing efficient automated solutions, minimizing downtime, and ensuring seamless integration of systems.

What is the difference between Automation Engineer vs Control Systems Engineer?

AspectAutomation EngineerControl Systems Engineer
Required CredentialsBachelor's in Engineering, certifications like PLC or SCADABachelor's in Electrical, Mechanical, or Systems Engineering, similar certifications
Work EnvironmentManufacturing, industrial plants, automation companiesIndustrial facilities, manufacturing, process control environments
Employer & Industry UsageTech firms, manufacturing, automation service providersIndustrial sectors, process industries, automation firms
Common Search & Comparison IntentYesYes

The main difference between Automation Engineers and Control Systems Engineers lies in their focus areas. Automation Engineers typically design and implement automated systems across various industries, emphasizing software and hardware integration. Control Systems Engineers concentrate on designing and maintaining control systems for industrial processes, often with a stronger emphasis on control theory and hardware. Both roles require similar qualifications and are often found working in manufacturing and industrial environments, but their specific responsibilities and focus areas differ.

What are the most commonly searched types of Automation Engineer jobs in Franklin, WI?

The most popular types of Automation Engineer jobs in Franklin, WI are:

What cities near Franklin, WI are hiring for Automation Engineer jobs?

Cities near Franklin, WI with the most Automation Engineer job openings:

Infographic showing various Automation Engineer job openings in Franklin, WI as of August 2026, with employment types broken down into 85% Full Time, 12% Part Time, and 3% Contract. Highlights an 85% Physical, 5% Hybrid, and 10% Remote job distribution, with an average salary of $99,448 per year, or $47.8 per hour.

Senior Automation Engineer - Central Automation

Eli Lilly and Company

Pleasant Prairie, WI • On-site

$100K - $132K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 3 days ago

New


Eli Lilly and Company rating

8.8

Company rating: 8.8 out of 10

Based on 63 frontline employees who took The Breakroom Quiz

11th of 86 rated pharmaceutical


Job description

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work-but it's work worth doing. If you're driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.


Position:

The Senior Automation Engineer - Central Automation serves as the site Subject Matter Expert (SME) for the integration of automated manufacturing processes, data exchange, and centralized management of production information across the LKC automation architecture. This role is distinct from Process Engineering, which owns the design, programming, and troubleshooting of PLC, SCADA, and HMI applications at the equipment/process level. The Central Automation SME instead owns the layer that connects and orchestrates those systems: the flow of recipes, parameters, cycle and batch data, material and process identification, and material handling automation across the site network, ensuring that physical processes and data exchange occur in a consistent, automated, and compliant manner from the plant floor up through site and enterprise systems.

This role requires deep technical understanding of system integration architectures, data historian administration, MES/recipe management, and material handling/identification systems, combined with the ability to troubleshoot cross-system data flow issues that span multiple platforms and vendors.

Responsibilities:

Key Objectives/Deliverables:

Process & Systems Integration

  • Own the integration architecture connecting shop-floor control systems (PLC/SCADA/HMI, owned by Process Engineering) with site-level automation and business systems (MES, historian, LIMS, QMS, ERP interfaces)

  • Design, configure, and maintain data exchange interfaces (OPC UA, MQTT, web services, database interfaces) between control systems and central platforms

  • Serve as the technical owner for recipe management, parameter master data, and centralized batch/cycle report generation and distribution

  • Ensure consistency and integrity of process and material data as it moves across integration layers

Data Historian & Data Management

  • Administer and optimize the site data historian (e.g., OSI PI or equivalent), including tag architecture, data contextualization, and retention strategy

  • Support data analytics and reporting initiatives by ensuring clean, structured, and accessible process data

  • Partner with Data Analytics/IT teams to enable dashboards, trending, and KPI reporting from integrated data sources

  • Maintain data integrity compliance (21 CFR Part 11, ALCOA+) across all integrated data flows

Material Handling & Identification Systems Integration

  • Serve as SME for the integration of automated material handling systems (AS/RS, AGVs/AMRs, conveyors, automated warehouse/logistics systems) with production and business systems

  • Own the integration of process and material identification systems (barcode, RFID, vision-based ID) into the site's data and tracking architecture

  • Ensure seamless, automated data exchange between material movement/storage systems and MES/ERP for traceability and genealogy

Technical Leadership & Compliance

  • Act as site SME for Central Automation integration topics, providing technical guidance to Process Engineering, Manufacturing, and IT/OT teams

  • Support investigations, root cause analysis, and change controls related to system integration and data flow issues

  • Develop and maintain technical documentation (functional specifications, data flow diagrams, interface control documents) for integrated systems

  • Support computer system validation (CSV) activities for integration platforms and data historian systems

  • Represent Central Automation integration topics during regulatory inspections and audits, as needed

  • Stay current on integration technologies and industry best practices (Industry 4.0, IIoT, MES/MOM platforms) and recommend improvements

Basic Requirements:

  • Minimum B.S. in Engineering, Computer Science, Information Technology, or related field

  • Minimum 5 years of experience in industrial automation, systems integration, or manufacturing IT/OT, preferably in a cGMP environment

  • Demonstrated experience with data historian systems, MES, and system-to-system data integration

  • Experience with material handling/identification systems integration (AS/RS, AGV, barcode/RFID) is a plus

  • Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.

Additional Preferences:

  • Technical expertise in data historian platforms (e.g., OSI PI), MES/MOM platforms (e.g., Syncade, POMSnet), and integration protocols (OPC UA, MQTT)

  • Working knowledge of PLC/SCADA/HMI systems sufficient to interface effectively with Process Engineering (not required to program or troubleshoot at the control level)

  • Experience with recipe/parameter management systems in a batch manufacturing environment

  • Knowledge of data integrity and CSV requirements (GAMP, 21 CFR Part 11)

  • Experience with warehouse/logistics automation systems in a regulated manufacturing environment

  • Strong analytical and problem-solving skills across multi-vendor, multi-platform environments

  • Ability to translate business/operational needs into technical integration solutions

  • Strong written and verbal communication skills across technical and non-technical audiences

Other Information:

  • Location: Lilly Kenosha County (LKC), Pleasant Prairie, Wisconsin

  • Standard business hours (days, M-F) with occasional off-hour support for integration testing, upgrades, or shutdown activities

  • Minimal travel required

  • Tasks require entering manufacturing areas which require wearing appropriate PPE

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.


Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.


Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women's Initiative for Leading at Lilly (WILL).


Actual compensation will depend on a candidate's education, experience, skills, and geographic location. The anticipated wage for this position is

$66,000 - $171,600

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly's compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

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About Eli Lilly

Sourced by ZipRecruiter

Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Indianapolis, IN, US

Year founded

1876