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Automation Engineer Manager Jobs in Boston, MA (NOW HIRING)

Lab Automation Engineer

Boston, MA · On-site

$86 - $128/hr

The Lab Automation Engineer will be a part of a team dedicated to designing, implementing, and ... manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com #J-18808-Ljbffr

New

Automation Engineer

Cambridge, MA · On-site

$120 - $145/hr

Automation Engineer About Blitzy Blitzy is a Cambridge, MA based AI software development platform ... Manage CI/CD pipeline integration for continuous quality validation. * Collaborate cross ...

Lab Automation Engineer

Boston, MA · On-site

$85K - $128K/yr

The Lab Automation Engineer will be a part of a team dedicated to designing, implementing, and ... manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

The Automation Engineer is responsible for the administration of all facilities and process ... Nothing in the for this role restricts management's right to assign or reassign duties and ...

The Automation Engineer is responsible for the administration of all facilities and process ... Nothing in the for this role restricts management's right to assign or reassign duties and ...

AI/Automation Engineer

Boston, MA · On-site

$140 - $200/hr

As the AI/Automation Engineer at Synapse Labs , you will design and build the systems that power ... Deploy and manage automation workloads in a cloud environment (GCP preferred). Improve CI/CD ...

Senior Automation Engineer

Abington, MA · On-site

$110K - $144K/yr

The Senior Automation Engineer role requires an individual have a diverse engineering skill set ... Understand the project scope and financials and exercise good time management skills to plan ...

Senior Automation Engineer

Plymouth, MA · On-site

$113K - $148K/yr

The Senior Automation Engineer role requires an individual have a diverse engineering skill set ... Understand the project scope and financials and exercise good time management skills to plan ...

They are seeking a QA Automation Engineer to perform integration testing with a focus on both ... project management skills. Preferred : • Solid background in healthcare experience. Company

Senior Automation Engineer

Plymouth, MA · On-site

$113K - $148K/yr

The Senior Automation Engineer role requires an individual have a diverse engineering skill set ... Understand the project scope and financials and exercise good time management skills to plan ...

Sr Engineer, Automation

Canton, MA · On-site

$110K - $144K/yr

This role is accountable for ensuring the reliability, compliance, lifecycle management, and ... The Senior Automation Engineer will lead automation strategy, support deviation investigations and ...

Senior Automation Engineer

Boston, MA · On-site

$113K - $148K/yr

The Senior Automation Engineer role requires an individual have a diverse engineering skill set ... Understand the project scope and financials and exercise good time management skills to plan ...

Showing results 21-40

Automation Engineer Manager information

See Boston, MA salary details

$40.2K

$116.4K

$177.1K

How much do automation engineer manager jobs pay per year?

As of Sep 5, 2026, the average yearly pay for automation engineer manager in Boston, MA is $116,382.00, according to ZipRecruiter salary data. Most workers in this role earn between $94,000.00 and $134,200.00 per year, depending on experience, location, and employer.

What does an automation engineer manager do?

An Automation Engineer Manager oversees teams responsible for designing, implementing, and maintaining automated systems within an organization. They coordinate projects, manage resources, and ensure that automation initiatives align with business goals. Their role involves both technical leadership—such as guiding the selection of automation tools and methodologies—and managerial duties, including training, performance evaluations, and cross-department collaboration. Ultimately, they work to increase efficiency, reduce costs, and improve process reliability through effective automation strategies.

What are the key skills and qualifications needed to thrive as an automation engineer manager, and why are they important?

To thrive as an Automation Engineer Manager, you need a solid background in automation engineering principles, project management, and leadership, typically supported by a relevant engineering degree and significant industry experience. Familiarity with PLCs, SCADA systems, robotics, industrial control software, and certifications like PMP or Six Sigma is highly valuable. Outstanding communication, problem-solving, and team-building abilities help drive project success and foster effective collaboration across departments. These skills and qualifications are essential for delivering efficient automation solutions, ensuring project quality, and leading high-performing engineering teams.

What are some common challenges automation engineer managers face when leading automation projects?

Automation Engineer Managers often encounter challenges such as aligning project goals with business objectives, managing cross-functional teams with varying technical backgrounds, and ensuring clear communication between stakeholders. Balancing the need for innovative automation solutions with budget constraints and tight deadlines is also a frequent hurdle. Successful managers proactively address these challenges by fostering collaboration, setting clear expectations, and continuously monitoring project progress to adapt as needed.

What is the difference between Automation Engineer Manager vs Automation Engineer?

AspectAutomation Engineer ManagerAutomation Engineer
ResponsibilitiesOversees automation projects, manages teams, and aligns automation strategies with business goals.Designs, develops, and implements automation solutions; focuses on technical tasks.
Required SkillsLeadership, project management, automation tools, programming, and system integration.Technical skills in automation tools, scripting, and software development.
CertificationsOften includes certifications like PMP, automation-specific certifications, or management credentials.Certifications in automation tools, programming, or industry standards.
Work EnvironmentTypically in managerial settings, coordinating teams and projects.Hands-on technical work in labs, manufacturing, or software environments.

The Automation Engineer Manager focuses on leading automation teams and strategic planning, while the Automation Engineer concentrates on technical development and implementation. Both roles require technical skills, but the manager also needs leadership and project management expertise.

What do automation engineer managers get paid?

Automation engineer managers typically earn a median annual salary ranging from $100,000 to $150,000, depending on experience, location, and industry. They often oversee automation projects, manage teams, and require knowledge of programming, scripting, and automation tools like PLCs or robotics systems.

What are the most commonly searched types of Automation Engineer jobs in Boston, MA?

The most popular types of Automation Engineer jobs in Boston, MA are:

What cities near Boston, MA are hiring for Automation Engineer Manager jobs?

Cities near Boston, MA with the most Automation Engineer Manager job openings:

Infographic showing various Automation Engineer Manager job openings in Boston, MA as of August 2026, with employment types broken down into 85% Full Time, 12% Part Time, and 3% Contract. Highlights an 83% Physical, 2% Hybrid, and 15% Remote job distribution, with an average salary of $116,382 per year, or $56 per hour.

Lab Automation Engineer

Biopharma Careers

Boston, MA • On-site

$86 - $128/hr

Other

Medical, Dental, Vision, Retirement, PTO

Posted 2 days ago

New


Job description

The Lab Automation Engineer will be a part of a team dedicated to designing, implementing, and validating automation solutions, across various automation platforms (Hamilton/Biomek/etc.), with a moderate degree of supervision. This role will support multiple disease areas and advance automation capabilities within Vertex Cell & Genetic Therapies. This role will develop an understanding of the research and development processes in order to establish new capabilities and improve efficiencies through automation enhancements.

This is an onsite position at our Leiden Center research site in Boston.

Key Duties and Responsibilities
  • Translates manual research and development processes into the design of automation systems.
  • Troubleshoots standard system problems by analyzing information to make judgments; documents identified solutions.
  • Supports daily operations, commissioning, and validation activities while working in cross-functional teams.
  • Works to identify continuous improvement opportunities and participates in driving them from conception through implementation.
  • Participates in automation design for both continuous and batch processes.
  • Provide technical guidance in the operation of the automation system and participates in the advancement of current automation capabilities and the design and implementation of new automation capabilities.
  • Complies with all relevant safety and GMP procedures.
Knowledge and Skills
  • Utilizing Hamilton and Biomek automation programming, method development, and general maintenance
  • Scheduling software for integrated automation work cells
  • Method development, optimization, and deployment of both highthroughput cell-based and biochemical assays
  • Working with automated data capture software
  • Some experience with common scripting languages (i.e., Python, R, C, C++) and basic familiarity with SQL databases.
  • Familiarity with version control tools such as Git, and experience with CI/CD pipelines and automated deployment practices preferred
  • Assisting large matrix technical teams to reach successful outcomes under accelerated timelines across broad disease areas and therapeutic modalities
  • Experience of being part of large matrix technical teams to reach successful outcomes under accelerated timelines.
  • Written and verbal communication skills to exchange straight forward information and confirm understanding
Education and Experience
  • Typically requires a Bachelor's Degree in chemical engineering, computer sciences or related field and 1 years experience in life sciences, engineering or academia
Pay Range

$85,600 - $128,400

Flex Designation

On-Site Designated

Flex Eligibility Status

In this On-Site designated role, you will work five days per week on-site with ad hoc flexibility. Note: The Flex status for this position is subject to Vertex’s Policy on Flex @ Vertex Program and may be changed at any time.

Company Information

Vertex is a global biotechnology company that invests in scientific innovation.

Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.

At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations. From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.

Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

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